diff --git a/README.md b/README.md index c846de18b970921582c96f65fac12c5f52d5419a..5069db83b59b26e4d269a0e5ed2941a34919a1bc 100644 --- a/README.md +++ b/README.md @@ -103,6 +103,7 @@ Configure the workflow according to your needs via editing the file `config.yaml - Open the copied config.yaml and set RAW_DIR and OUT_DIR. You must provide absolute paths. - The **RAW_DIR** should point to a directory where MetaSnk expects to find raw fastq data. This directory must have the following structure: + ``` $RAW_DIR ├── dataset_test_1 @@ -114,6 +115,7 @@ Configure the workflow according to your needs via editing the file `config.yaml ``` - The **OUT_DIR** is the directory where MetaSnk will save the outputs of the workflow under the following structure: + ``` $OUT_DIR ├── dataset_test_1 diff --git a/images/PhlAnProf_dag.png b/images/PhlAnProf_dag.png new file mode 100644 index 0000000000000000000000000000000000000000..cf6cbd8b1b0b7897feb9d32b3eaecc66177d663a Binary files /dev/null and b/images/PhlAnProf_dag.png differ