diff --git a/README.md b/README.md index 56e8b0b5345adf4f5f77ebe85e33fba90dabc128..53d69faf4fed6fc44f31a0b90e5068699564f6a8 100644 --- a/README.md +++ b/README.md @@ -122,6 +122,8 @@ Some rules will use this environment. conda env create -f ./envs/MetaSnk.yaml conda activate MetaSnk +If this step fails, be sure that the dependencies listed before are already installed! + ##### Download singularity containers and reference databases MetaSnk wraps system requirements and software dependencies within singularity containers. Download these containers by running rule 'pullSIFS' : diff --git a/envs/MetaSnk.yaml b/envs/MetaSnk.yaml index 4d4381faa923a250dd4dfc2450e59b647a6fccf7..1755809340f8d50db8ae53a86833b34151265598 100644 --- a/envs/MetaSnk.yaml +++ b/envs/MetaSnk.yaml @@ -1,5 +1,7 @@ name: MetaSnk channels: + - conda-forge + - bioconda - defaults dependencies: - snakemake=5.5.0