From e99520c17dc977114ee9ec096114a659293aabd5 Mon Sep 17 00:00:00 2001
From: ticlla <monicaroxana.ticllaccenhua@unibas.ch>
Date: Fri, 29 Nov 2019 14:29:17 +0100
Subject: [PATCH] update configuration to run strainphlan in slurm using
cpus-per-task
---
profiles/slurm/config.yaml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/profiles/slurm/config.yaml b/profiles/slurm/config.yaml
index 7001cda..1b50379 100644
--- a/profiles/slurm/config.yaml
+++ b/profiles/slurm/config.yaml
@@ -4,7 +4,7 @@ use-singularity: true
singularity-args: '--bind $HOME'
jobscript: "slurm-jobscript.sh"
#cluster: "slurm-submit-advanced.py"
-cluster: "sbatch -n {cluster.ntasks} --nodes {cluster.nodes} --time {cluster.time} --mem {cluster.mem} --qos {cluster.qos}"
+cluster: "sbatch --cpus-per-task {cluster.cpus_per_task} -n {cluster.ntasks} --nodes {cluster.nodes} --time {cluster.time} --mem {cluster.mem} --qos {cluster.qos}"
#cluster-status: "slurm-status.py"
max-jobs-per-second: 1
max-status-checks-per-second: 10
--
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