diff --git a/report/PhlAnProf/strphlan_clades_profiled.rst b/report/PhlAnProf/strphlan_clades_profiled.rst new file mode 100644 index 0000000000000000000000000000000000000000..28ebc1e93877a64d0a532c7deb290eac30db9ac1 --- /dev/null +++ b/report/PhlAnProf/strphlan_clades_profiled.rst @@ -0,0 +1,3 @@ +Table listing clades profiled by StrainPhlAn, with additional information. Notice that StrainPhlAn performs additional checks/filtering steps and if less than two samples remain, strain profiling is not performed for a particular clade. Thus this list is shorter than {{ snakemake.wildcards.dataset }}_clades.txt_. + +Also notice that if less than 4 samples remained, RAxML will not create a tree and therefore subsequent images will not be generated (see columns raxml_tree_png, raxml_ggtree_1_png, raxml_ggtree_2_png). \ No newline at end of file