From fc06e53bf546ae99c67040dce194ef11810ea897 Mon Sep 17 00:00:00 2001
From: ticlla <monicaroxana.ticllaccenhua@unibas.ch>
Date: Fri, 29 Nov 2019 15:27:39 +0100
Subject: [PATCH] add missing caprion file to generate PhlAnProf report

---
 report/PhlAnProf/strphlan_clades_profiled.rst | 3 +++
 1 file changed, 3 insertions(+)
 create mode 100644 report/PhlAnProf/strphlan_clades_profiled.rst

diff --git a/report/PhlAnProf/strphlan_clades_profiled.rst b/report/PhlAnProf/strphlan_clades_profiled.rst
new file mode 100644
index 0000000..28ebc1e
--- /dev/null
+++ b/report/PhlAnProf/strphlan_clades_profiled.rst
@@ -0,0 +1,3 @@
+Table listing clades profiled by StrainPhlAn, with additional information. Notice that StrainPhlAn performs additional checks/filtering steps and if less than two samples remain, strain profiling is not performed for a particular clade. Thus this list is shorter than {{ snakemake.wildcards.dataset }}_clades.txt_. 
+
+Also notice that if less than 4 samples remained, RAxML will not create a tree and therefore subsequent images will not be generated (see columns raxml_tree_png, raxml_ggtree_1_png, raxml_ggtree_2_png).
\ No newline at end of file
-- 
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