From 8eeae10e834d0f996b88e004506e681e0c78f5d5 Mon Sep 17 00:00:00 2001
From: Christoph Stritt <stritt0001@login01.cluster.bc2.ch>
Date: Tue, 14 Nov 2023 14:53:41 +0100
Subject: [PATCH] Snakefile updated

---
 assembly/workflow/Snakefile | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/assembly/workflow/Snakefile b/assembly/workflow/Snakefile
index d47aae1..8dbb248 100755
--- a/assembly/workflow/Snakefile
+++ b/assembly/workflow/Snakefile
@@ -1,8 +1,7 @@
-
-containerized: "container/assemblySC.sif"
-
 include: "rules/common.smk"
 
+containerized: config["container"]
+
 include: "rules/readQC.smk"
 
 include: "rules/assemble.smk"
-- 
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