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README.md 658 B

Treemmer

A tool to reduce large phylogenetic datasets with minimal loss of diversity.

Here you find the software, the data and scripts used in the manuscript (Influenza_data, MTB_data and stochastic_component), and a short tutorial on fine tuning the behaviour of Treemmer with the pruning options.

If you use Treemmer please cite:

Menardo et al. (2018). Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. BMC Bioinformatics 19:164.

https://doi.org/10.1186/s12859-018-2164-8.

Check also treemmer-animate, a script by Thomas Hackl to visualize the "treemming" process: https://github.com/thackl/treemmer-animate