diff --git a/README.md b/README.md index 3df7d86b9e29a1aa702c84369d9be3ba5e9586b8..13996a4c7bf4b924ac1fbae7c6f0c96c6a4ec585 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,14 @@ # Treemmer -A tool to to reduce large phylogenetic datasets with minimal loss of diversity. +A tool to reduce large phylogenetic datasets with minimal loss of diversity. -Here you find the software, the data and scripts used in the manuscript (Influenza_data, MTB_data and stochastic component), and a short tutorial on fine tuning the behaviour of Treemmer with the pruning options. +Here you find the software, the data and scripts used in the manuscript (Influenza_data, MTB_data and stochastic_component), and a short tutorial on fine tuning the behaviour of Treemmer with the pruning options. -Check also treemmer-animate a script by Thomas Hackl to visualize the results of Treemmer: https://github.com/thackl/treemmer-animate +If you use Treemmer please cite: + +Menardo et al. (2018). Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. BMC Bioinformatics 19:164. + + https://doi.org/10.1186/s12859-018-2164-8. + +Check also treemmer-animate, a script by Thomas Hackl to visualize the "treemming" process: https://github.com/thackl/treemmer-animate