From 676912b664d0157b82740998cc25ed5b9ae1b4e8 Mon Sep 17 00:00:00 2001
From: Menardo Fabrizio <fabrizio.menardo@unibas.ch>
Date: Fri, 12 Jan 2018 09:35:57 +0100
Subject: [PATCH] call plot only if stop = 0
---
Treemmer.py | 28 ++++++++++++++--------------
1 file changed, 14 insertions(+), 14 deletions(-)
diff --git a/Treemmer.py b/Treemmer.py
index 176f378..d54ebed 100644
--- a/Treemmer.py
+++ b/Treemmer.py
@@ -17,7 +17,7 @@
# along with this program. If not, see <http://www.gnu.org/licenses/>.
-# You have to install ete3 http://etetoolkit.org/download/
+# You have to install ete3 http://etetoolkit.org/
# and joblib https://pythonhosted.org/joblib/ to run Treemmer
@@ -399,19 +399,19 @@ if stop == 0: # create file for plot of rltd
################################################# make plot directly ##########################################################
-if not arguments.no_plot:
- import numpy as np
- import matplotlib.pyplot as plt
- from matplotlib.ticker import MaxNLocator
- ax = plt.figure().gca()
- ax.xaxis.set_major_locator(MaxNLocator(integer=True))
- plt.scatter(x, y, s= 2, c= 'black')
- plt.xlim(ori_length,0)
- plt.ylim(-0.02,1.02)
- plt.xlabel('Number of leaves')
- plt.ylabel('Relative tree length')
- #plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.png')
- plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.pdf')
+ if not arguments.no_plot:
+ import numpy as np
+ import matplotlib.pyplot as plt
+ from matplotlib.ticker import MaxNLocator
+ ax = plt.figure().gca()
+ ax.xaxis.set_major_locator(MaxNLocator(integer=True))
+ plt.scatter(x, y, s= 2, c= 'black')
+ plt.xlim(ori_length,0)
+ plt.ylim(-0.02,1.02)
+ plt.xlabel('Number of leaves')
+ plt.ylabel('Relative tree length')
+ #plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.png')
+ plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.pdf')
--
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