launch_bamqc.slurm

#!/bin/bash 

#SBATCH --job-name=bamQC
#SBATCH --cpus-per-task=1
#SBATCH --mem-per-cpu=2G
#SBATCH --time=0:30:00
#SBATCH --output=bamQC.o
#SBATCH --error=bamQC.e
#SBATCH --qos=30min

singularity exec container.img qualimap bamqc -bam ERR760779.dedup.bam -sd -sdmode 1 -outdir . -outfile ERR760779_bamqc