launch_MarkDuplicates.slurm

#!/bin/bash 

#SBATCH --job-name=MarkDuplicates
#SBATCH --cpus-per-task=1
#SBATCH --mem-per-cpu=4G
#SBATCH --time=6:00:00
#SBATCH --output=MarkDuplicates.o
#SBATCH --error=MarkDuplicates.e
#SBATCH --qos=6hours

singularity exec container.img picard MarkDuplicates INPUT=ERR760779_merged.bam OUTPUT=ERR760779.dedup.bam METRICS_FILE=ERR760779.markduplicates.metrics ASSUME_SORTED=true