diff --git a/README.rst b/README.rst index 446da3b872220ad14290a6905f2db78b2a58f601..86a0517da40fe33f76e4befe7faea6bcfd80f5e6 100644 --- a/README.rst +++ b/README.rst @@ -38,7 +38,7 @@ Features Installation ------------ -To install `pathways` into a virtualenv: +It's recommended to install `pathways` into a virtual environment: 1. Clone the public repository:: @@ -48,22 +48,27 @@ To install `pathways` into a virtualenv: $ git clone ssh://git@git.scicore.unibas.ch:2222/TBRU/pathways.git -2. Assuming you have Anaconda2 installed, with Conda, create a new environment for Python 3.5:: +2. Assuming you have Anaconda2 installed, with Conda, create a new environment with the Intel distribution for Python 3.6:: - $ conda create -n pathways python=3.5 pip3 + $ conda config --add channels intel + $ conda create -n pathways -c intel python=3.6 icu=58 scipy numpy pandas matplotlib PS: The conda environment should be stored at $HOME/.conda/envs 3. Activate the environment and install python-igraph package from conda-forge:: $ source activate pathways - $ conda install -c conda-forge python-igraph + $ conda install -c conda-forge python-igraph pycairo 4. Install `pathways`:: $ cd pathways $ python setup.py install + or:: + + $ pip install + Documentation -------------