From bb50041eb669497d8530dd216f97e798478b827f Mon Sep 17 00:00:00 2001
From: ticlla <monicaroxana.ticllaccenhua@unibas.ch>
Date: Wed, 28 Aug 2019 19:15:14 +0200
Subject: [PATCH] update installation instructions to use intel"s python 3.6
distribution
---
README.rst | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/README.rst b/README.rst
index 446da3b..86a0517 100644
--- a/README.rst
+++ b/README.rst
@@ -38,7 +38,7 @@ Features
Installation
------------
-To install `pathways` into a virtualenv:
+It's recommended to install `pathways` into a virtual environment:
1. Clone the public repository::
@@ -48,22 +48,27 @@ To install `pathways` into a virtualenv:
$ git clone ssh://git@git.scicore.unibas.ch:2222/TBRU/pathways.git
-2. Assuming you have Anaconda2 installed, with Conda, create a new environment for Python 3.5::
+2. Assuming you have Anaconda2 installed, with Conda, create a new environment with the Intel distribution for Python 3.6::
- $ conda create -n pathways python=3.5 pip3
+ $ conda config --add channels intel
+ $ conda create -n pathways -c intel python=3.6 icu=58 scipy numpy pandas matplotlib
PS: The conda environment should be stored at $HOME/.conda/envs
3. Activate the environment and install python-igraph package from conda-forge::
$ source activate pathways
- $ conda install -c conda-forge python-igraph
+ $ conda install -c conda-forge python-igraph pycairo
4. Install `pathways`::
$ cd pathways
$ python setup.py install
+ or::
+
+ $ pip install
+
Documentation
-------------
--
GitLab