Data integration and annotation workflows

Open-Source Computational Structural Biology Framework

ProMod3 - A Versatile Homology Modelling Toolbox

Run the AlphaFold2 pipeline on the sciCORE cluster... provided by the SWISS-MODEL team ;)

imcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

General purpose Snakemake RNA-seq analysis workflow

scripts and tools to evaluate monochrome cameras (for microscopy)

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067

Analysis with exponential growth population prior, and 1/x prior on the clock rate

User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline

PowerShell based collector of Citrix metrics for Prometheus (creating a textfile for the windows_exporter).

package to correct CTF