Explore projects
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Django web framework workshop, Monday 29th June from 10:15 to 12:00 in the sky lounge.
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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Python script that can be used to compress a directory including all its files and subdirectories.
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HTSinfer is a computational tool to infer meta-data from High Throughput Sequencing (HTS) data.
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This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.
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IMCF-public / Batch_PSF_analyser
GNU General Public License v3.0 onlyImageJ-macro to batch analyse all PSF images in a folder
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Bienchen / iplt
GNU General Public License v3.0 onlyCopy of of the original IPLT repository
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TBRU / MetagenomicSnake
MIT LicenseMetagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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vamp / auto-tx
GNU General Public License v3.0 onlyA Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.
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zavolan_public / PAQR_KAPAC
GNU General Public License v2.0 or laterscripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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TBRU / pathways
MIT LicensePathways allows you to compute importance scores for a a list of metabolic pathways.
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TBRU / Treemmer
GNU General Public License v3.0 or laterPython tool to reduce size and redundancy of phylogenetic datasets
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imcf / noisee
GNU General Public License v3.0 onlyAn easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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