User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline

General purpose Snakemake RNA-seq analysis workflow

Material and data for the workshop in South Africa (2018)

Data integration and annotation workflows

Python tool to reduce size and redundancy of phylogenetic datasets

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

singularity definition files

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

QMEAN - Qualitative Model Energy ANalysis

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.