diff --git a/README.md b/README.md index 9f9759b0ec9a0e34a26baf35e4855a7028e1b8db..9f578c40e62872017090efaac15522e07d447a6e 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,9 @@ - helper scripts used in the IMCF workflow to register and analyse 3D volumes of mouse brain. - the workflow is documented on the Biozentrums internal wiki space: https://wiki.biozentrum.unibas.ch/x/xEBwEw +## median.ijm +- IJ-macro. Applies a 15px median filter to an image and saves the resulting image + ## remap_labelimage.py - Fiji macro to workaround a bug in Imaris measurement - re-maps the reference atlas label image