From c2ad39fe3c5c9cad37ce74facfb0b7d721734757 Mon Sep 17 00:00:00 2001
From: Kai Schleicher <kai.schleicher@unibas.ch>
Date: Tue, 13 Dec 2022 12:40:35 +0000
Subject: [PATCH] Update README.md

---
 README.md | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index a266bb6..9f9759b 100644
--- a/README.md
+++ b/README.md
@@ -3,5 +3,14 @@
 - helper scripts used in the IMCF workflow to register and analyse 3D volumes of mouse brain.
 - the workflow is documented on the Biozentrums internal wiki space: https://wiki.biozentrum.unibas.ch/x/xEBwEw
 
-## License
+## remap_labelimage.py
+- Fiji macro to workaround a bug in Imaris measurement
+- re-maps the reference atlas label image
+
+## atlas-analysis.ipynb
+juypter notebook example of secondary analysis:
+- label image intensity to atlas region mapping
+- aggregation of object frequency
+
+# License
 GNU GPLv3
-- 
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