diff --git a/2d_spots_in_fibers.py b/2d_spots_in_fibers.py index f7bb52a9b02894285d061caf5ed16c2794413158..00f041172e0df123862e3917e7f92eb7a7171be0 100644 --- a/2d_spots_in_fibers.py +++ b/2d_spots_in_fibers.py @@ -490,6 +490,7 @@ def close_images(list_of_imps): path_to_image = str(path_to_image).replace("\\","/") fiber_segmentation_roiset = str(fiber_segmentation_roiset).replace("\\","/") parent_dir, filename, ext = get_parentdir_filename_ext_from_path(path_to_image) +IJ.log("now working on: " + str(filename + ext)) write_bf_memoryfile(path_to_image) n_channels, image_width, image_height, bit_depth = get_ome_metadata(path_to_image, series_number) processing_channels_string = processing_channels_string.replace(" ", "")