diff --git a/2d_spots_in_fibers.py b/2d_spots_in_fibers.py index f16d7c78b08a1a73d20390073230011f185e6e8d..6dffdfcc52781bcbe5a84f6bf869e2e046152cba 100644 --- a/2d_spots_in_fibers.py +++ b/2d_spots_in_fibers.py @@ -313,7 +313,8 @@ def run_trackmate_dog_spot_detector(imp, quality_threshold): exportSpotsAsDots = True exportTracksOnly = False - label_imp = LabelImgExporter.createLabelImagePlus(trackmate, exportSpotsAsDots, exportTracksOnly, False) + labelIdPainting = LabelImgExporter.LabelIdPainting.LABEL_IS_SPOT_ID + label_imp = LabelImgExporter.createLabelImagePlus(trackmate, exportSpotsAsDots, exportTracksOnly, labelIdPainting) label_imp.setCalibration(cal) imp.close()