From 0c872f997981302c949388e0f706fe57628a92ba Mon Sep 17 00:00:00 2001
From: Niko Ehrenfeuchter <nikolaus.ehrenfeuchter@unibas.ch>
Date: Tue, 27 Mar 2018 16:56:27 +0200
Subject: [PATCH] Update dressImage to add a subtext to the images
---
.../NoiSee/NoiSee_Fluorescein_Analysis.ijm | 21 ++++++++++++-------
1 file changed, 14 insertions(+), 7 deletions(-)
diff --git a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
index 47d556f..bedd297 100644
--- a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
+++ b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
@@ -71,9 +71,10 @@ function makeHistogram(image_id, lut_name, logarithmic) {
return getImageID();
}
-function dressImage(image_id, lut_name, enhance) {
+function dressImage(image_id, lut_name, enhance, desc) {
// applies a given LUT to an image, applies the "Enhance contrast" command to it if the
- // "enhance" parameter is non-negative, adds a calibration bar (non-overlay)
+ // "enhance" parameter is non-negative, adds a calibration bar (non-overlay) and optionally
+ // adds a text description below the image
// returns the ID of the new image, closing the old one
selectImage(image_id);
logi("dressImage(" + getTitle() + ", " + lut_name + ", " + enhance + ")");
@@ -94,6 +95,8 @@ function dressImage(image_id, lut_name, enhance) {
"label=White number=5 decimal=0 font=12 zoom=3.3 bold");
new_id = getImageID();
rename(title);
+ if (desc != "")
+ addTextToImage(new_id, false, "Center", 22, desc);
closeImage(image_id);
return new_id;
}
@@ -312,6 +315,15 @@ function process_fluo() {
////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
+ /////////// decorate images, add calibration bars //////////// ////////// ////////// //////////
+ rgb_hist = makeHistogram(img_sig, "physics", true);
+ addTextToImage(rgb_hist, false, "Center", 12, "Histogram of absolute signal.");
+ rgb_sig = dressImage(img_sig, "physics", 0.35, "Absolute signal (fluorescein - background).");
+ rgb_fluo = dressImage(img_fluo, "Glow", -1, "Fluorescein image (original data).");
+ rgb_dark = dressImage(img_bg, "Glow", -1, "Dark image (original data).");
+ ////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
+
+
/////////// write summary of results and settings into a new table //////////// //////////
title = "NoiSee Results Summary";
@@ -332,11 +344,6 @@ function process_fluo() {
////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
- /////////// decorate images, add calibration bars //////////// ////////// ////////// //////////
- rgb_hist = makeHistogram(img_sig, "physics", true);
- rgb_sig = dressImage(img_sig, "physics", 0.35);
- rgb_fluo = dressImage(img_fluo, "Glow", -1);
- rgb_dark = dressImage(img_bg, "Glow", -1);
////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
--
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