From a6a6edd83fbad38bc9b1e03d2bc6e89fab9768a1 Mon Sep 17 00:00:00 2001
From: Niko Ehrenfeuchter <nikolaus.ehrenfeuchter@unibas.ch>
Date: Tue, 27 Mar 2018 16:56:51 +0200
Subject: [PATCH] Re-order images for PDF export
---
.../NoiSee/NoiSee_Fluorescein_Analysis.ijm | 16 +++++++++++++---
1 file changed, 13 insertions(+), 3 deletions(-)
diff --git a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
index bedd297..d5c5df4 100644
--- a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
+++ b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Fluorescein_Analysis.ijm
@@ -344,12 +344,22 @@ function process_fluo() {
////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
+ ////////// adjust order of the images and create a PDF ////////// ////////// //////////
+
+ // the PDF exporter of ImageJ simply concatenates all open images in ascending order,
+ // starting with the oldest one first, therefore we need to duplicate all images into
+ // new ones (closing the old ones) in the order which is desired in the resulting PDF:
+ rgb_fluo = duplicateAndClose(rgb_fluo);
+ rgb_dark = duplicateAndClose(rgb_dark);
+ rgb_sig = duplicateAndClose(rgb_sig);
+ rgb_hist = duplicateAndClose(rgb_hist);
+
+ img_summary = duplicateAndClose(img_summary);
+
////////// ////////// ////////// ////////// ////////// ////////// ////////// //////////
- ////////// arrange the windows and create a PDF of images and plots ////////// //////////
- rgb_sig = duplicateAndClose(rgb_sig);
- rgb_hist = duplicateAndClose(rgb_hist);
+ ////////// save the log, create PDF and arrange the windows on the screen ////////// //////////
if (save_log) {
selectWindow("Log");
saveAs("Text", respath + "/Log.txt");
--
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