diff --git a/scripts/run_bead_analysis.ijm b/scripts/run_bead_analysis.ijm new file mode 100644 index 0000000000000000000000000000000000000000..7298cc5b0fe7b6d4bdc0a5bb9e04ebf48d784d5a --- /dev/null +++ b/scripts/run_bead_analysis.ijm @@ -0,0 +1,17 @@ +// example macro demonstrating how to launch the NoiSee bead analysis with +// predefined parameters / inputs: + +opts = ""; +opts += "msg_title=[none],"; +opts += "msg_note_close=[none],"; +opts += "beadsimage=[noisee-data/bead-image.tif],"; +opts += "beads_diameter=[15],"; +opts += "beads_noisetolerance=[50],"; +opts += "make_kymographs=[true],"; +opts += "save_measurements=[true],"; +opts += "save_pdf=[true],"; +opts += "keep_roiimages=[true]"; + +run("NoiSee Bead Analysis", opts); + +print("Noisee options: " + opts);