From ad13b808122beccb9e5f17fc8d825af586f3af74 Mon Sep 17 00:00:00 2001
From: Niko Ehrenfeuchter <nikolaus.ehrenfeuchter@unibas.ch>
Date: Wed, 28 Mar 2018 16:04:31 +0200
Subject: [PATCH] Add example how to launch NoiSee from a macro
---
scripts/run_bead_analysis.ijm | 17 +++++++++++++++++
1 file changed, 17 insertions(+)
create mode 100644 scripts/run_bead_analysis.ijm
diff --git a/scripts/run_bead_analysis.ijm b/scripts/run_bead_analysis.ijm
new file mode 100644
index 0000000..7298cc5
--- /dev/null
+++ b/scripts/run_bead_analysis.ijm
@@ -0,0 +1,17 @@
+// example macro demonstrating how to launch the NoiSee bead analysis with
+// predefined parameters / inputs:
+
+opts = "";
+opts += "msg_title=[none],";
+opts += "msg_note_close=[none],";
+opts += "beadsimage=[noisee-data/bead-image.tif],";
+opts += "beads_diameter=[15],";
+opts += "beads_noisetolerance=[50],";
+opts += "make_kymographs=[true],";
+opts += "save_measurements=[true],";
+opts += "save_pdf=[true],";
+opts += "keep_roiimages=[true]";
+
+run("NoiSee Bead Analysis", opts);
+
+print("Noisee options: " + opts);
--
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