From ecc207b6ae7fb2946417e79bcceba1c12a25de8c Mon Sep 17 00:00:00 2001
From: Niko Ehrenfeuchter <nikolaus.ehrenfeuchter@unibas.ch>
Date: Fri, 3 Aug 2018 16:19:43 +0200
Subject: [PATCH] Check input data dimensions to meet requirements
---
.../scripts/Plugins/NoiSee/NoiSee_Bead_Analysis.ijm | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Bead_Analysis.ijm b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Bead_Analysis.ijm
index d3f12a9..d325357 100644
--- a/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Bead_Analysis.ijm
+++ b/src/main/resources/scripts/Plugins/NoiSee/NoiSee_Bead_Analysis.ijm
@@ -538,7 +538,15 @@ function process_beads() {
fname_nosuffix = stripOmeSuffix(File.nameWithoutExtension); // filename without extension
respath = fpath + "/" + fname_nosuffix + "_NoiSee-Bead-Analysis"; // path for additional results
File.makeDirectory(respath);
- // TODO: check if image dimensions meet our expectations (z=1, t>1)
+
+ // check if image dimensions meet our expectations (z=1, t>1)
+ getDimensions(_, _, _, slices, frames);
+ if (slices > 1 || frames == 1) {
+ print("Input data needs to be a time-lapse with a single slice only!");
+ print("Found " + slices + " slices, expected 1!");
+ print("Found " + frames + " frames, expected > 1!");
+ exit_show();
+ }
if (bitDepth() == 32) {
print("Floating point images are not supported!");
--
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