diff --git a/src/imcflibs/imagej/projections.py b/src/imcflibs/imagej/projections.py index ab332f3bb49ec64d06ad53d1574f8884ee357882..e129085a0bc2b6336172ff6040da8ac4370a8c6d 100644 --- a/src/imcflibs/imagej/projections.py +++ b/src/imcflibs/imagej/projections.py @@ -19,6 +19,10 @@ def average(imp): ij.ImagePlus The result of the projection. """ + if imp.getDimensions()[3] < 2: + log.warn("ImagePlus is not a z-stack, not creating a projection!") + return imp + log.debug("Creating average projection...") proj = ZProjector.run(imp, "avg") return proj @@ -37,6 +41,10 @@ def maximum(imp): ij.ImagePlus The result of the projection. """ + if imp.getDimensions()[3] < 2: + log.warn("ImagePlus is not a z-stack, not creating a projection!") + return imp + log.debug("Creating maximum intensity projection...") proj = ZProjector.run(imp, "max") return proj @@ -59,6 +67,10 @@ def create_and_save(imp, projections, path, filename, export_format): export_format : str The suffix to be given to Bio-Formats, determining the storage format. """ + if imp.getDimensions()[3] < 2: + log.error("ImagePlus is not a z-stack, not creating any projections!") + return + command = { 'Average': 'avg', 'Maximum': 'max',