From c787b8929306f558afc2eacf6b9fcabecbcbedd3 Mon Sep 17 00:00:00 2001
From: flalom <flavio.lombardo@outlook.com>
Date: Thu, 8 Feb 2024 23:52:15 +0100
Subject: [PATCH] Fix typos

---
 R/get_QC_plots_and_stats.R | 4 ++--
 README.md                  | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/R/get_QC_plots_and_stats.R b/R/get_QC_plots_and_stats.R
index 7872515..e6825cc 100644
--- a/R/get_QC_plots_and_stats.R
+++ b/R/get_QC_plots_and_stats.R
@@ -108,7 +108,7 @@ get_QC_plots_parsed_merged_data <- function(.data,
 
       if (save_plots) {
         if (save_plots_in_patient_specific_subfolders) {
-          if (!dir.exists(paste0(saving_plots_folder, "/", pid))) dir.create(paste0(saving_plots_folder, "/", pid))
+          if (!dir.exists(paste0(saving_plots_folder, "/", pid))) dir.create(paste0(saving_plots_folder, "/", pid), showWarnings = F, recursive = T)
           ggsave(
             plot = p,
             filename = paste0(
@@ -128,7 +128,7 @@ get_QC_plots_parsed_merged_data <- function(.data,
           )
         } else {
           # Saving plots in .pdf at 600 dpi
-          if (!dir.exists(saving_plots_folder)) dir.create(saving_plots_folder)
+          if (!dir.exists(saving_plots_folder)) dir.create(saving_plots_folder, showWarnings = F, recursive = T)
           ggsave(
             plot = p,
             width = p_width,
diff --git a/README.md b/README.md
index 837bb55..f5ce505 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
 ![](https://img.shields.io/badge/R-%3E%3D%204.0.0-blue)
 
 # Overview
-DRUGSENS is a R-package tha allow users to automatically analyze QuPath&trade; output data from imaging analysis. 
+DRUGSENS is a R-package that allows users to automatically analyze QuPath&trade; output data from imaging analysis. 
 Here we include a QuPath&trade; script to run reproducible QuPath&trade;-based image analysis, and some examples on how DRUGSENS can be used. For more detailed examples of QuPath&trade; scripting please refer to [QuPath&trade;'s Documentation](https://qupath.readthedocs.io/en/stable/). 
 This script should be placed into scripts within QuPath&trade;. We tested this code to a previous version of QuPath&trade.
 This packge is complementary to the STAR protocol: `...`
@@ -9,7 +9,7 @@ This packge is complementary to the STAR protocol: `...`
 # Installation
 
 ``` r
-devtools::install_gitlab("https://git.scicore.unibas.ch/ovca-research/drugsens")
+devtools::install_git("https://git.scicore.unibas.ch/ovca-research/drugsens")
 # OR
 devtools::install_github("https://github.com/flalom/drugsens") # this is the mirroring repo of the gitlab
 ```
-- 
GitLab