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modelling_close_small_deletions.py

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  • load_and_display.py 540 B
    # Load chain A of SDH
    ent=io.LoadPDB('sdh.pdb', restrict_chains='A')
    
    # create graphics object
    go=gfx.Entity('SDH', ent)
    # set rendermode of full graphical object to interpolated spline
    go.SetRenderMode(gfx.SLINE)
    # select sidechains (including bond to C-alpha and N in case of proline)
    sidechains=ent.Select('aname!=CA,C,N,O', mol.EXCLUSIVE_BONDS)
    # set rendering of sidechains to simple
    go.SetRenderMode(gfx.SIMPLE, sidechains)
    
    # add object to scene
    scene.Add(go)
    
    # center the scene on the geometric center of the SDH
    scene.CenterOn(go)