From 1c3c25b1eba986de42a52a0b6fc7abae4e745073 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Mon, 22 Nov 2021 08:15:44 +0100
Subject: [PATCH] Updated compiled doc.
---
doc/html/actions/index.html | 1 +
doc/html/actions/index_dev.html | 1 +
doc/html/buildsystem.html | 5 +++--
doc/html/changelog.html | 1 +
doc/html/cmake/index.html | 1 +
doc/html/container/docker.html | 1 +
doc/html/container/index.html | 1 +
doc/html/container/singularity.html | 1 +
doc/html/contributing.html | 1 +
doc/html/core/geometry.html | 1 +
doc/html/core/graph_minimizer.html | 1 +
doc/html/core/helper.html | 1 +
doc/html/core/index.html | 1 +
doc/html/core/pm3argparse.html | 1 +
doc/html/core/runtime_profiling.html | 1 +
doc/html/core/setcompoundschemlib.html | 1 +
doc/html/dev_setup.html | 1 +
doc/html/developers.html | 1 +
doc/html/genindex.html | 1 +
doc/html/gettingstarted.html | 1 +
doc/html/index.html | 1 +
doc/html/license.html | 1 +
doc/html/loop/all_atom.html | 1 +
doc/html/loop/backbone.html | 1 +
doc/html/loop/index.html | 1 +
doc/html/loop/load_loop_objects.html | 1 +
doc/html/loop/mm_system_creation.html | 1 +
doc/html/loop/structure_db.html | 1 +
doc/html/loop/torsion_sampler.html | 1 +
doc/html/modelling/algorithms.html | 1 +
doc/html/modelling/gap_handling.html | 1 +
doc/html/modelling/index.html | 1 +
doc/html/modelling/loop_candidates.html | 1 +
doc/html/modelling/loop_closing.html | 1 +
doc/html/modelling/model_checking.html | 1 +
doc/html/modelling/monte_carlo.html | 1 +
doc/html/modelling/pipeline.html | 1 +
doc/html/modelling/sidechain_reconstruction.html | 1 +
doc/html/portableIO.html | 1 +
doc/html/py-modindex.html | 1 +
doc/html/references.html | 1 +
doc/html/scoring/all_atom_scorers.html | 1 +
doc/html/scoring/backbone_score_env.html | 1 +
doc/html/scoring/backbone_scorers.html | 1 +
doc/html/scoring/index.html | 1 +
doc/html/scoring/other_scoring_functions.html | 1 +
doc/html/search.html | 1 +
doc/html/sidechain/disulfid.html | 1 +
doc/html/sidechain/frame.html | 1 +
doc/html/sidechain/graph.html | 1 +
doc/html/sidechain/index.html | 1 +
doc/html/sidechain/loading.html | 1 +
doc/html/sidechain/rotamer.html | 1 +
doc/html/sidechain/rotamer_constructor.html | 1 +
doc/html/sidechain/rotamer_lib.html | 1 +
doc/html/sidechain/subrotamer_optimizer.html | 1 +
doc/html/user_contributions.html | 1 +
doc/html/users.html | 1 +
58 files changed, 60 insertions(+), 2 deletions(-)
diff --git a/doc/html/actions/index.html b/doc/html/actions/index.html
index f95dd340..c17396d6 100644
--- a/doc/html/actions/index.html
+++ b/doc/html/actions/index.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Building ProMod3" href="../buildsystem.html" />
diff --git a/doc/html/actions/index_dev.html b/doc/html/actions/index_dev.html
index 8e6ea4b3..408223d6 100644
--- a/doc/html/actions/index_dev.html
+++ b/doc/html/actions/index_dev.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="ProMod3’s Share Of CMake" href="../cmake/index.html" />
diff --git a/doc/html/buildsystem.html b/doc/html/buildsystem.html
index 05fc1b2e..d013cbc7 100644
--- a/doc/html/buildsystem.html
+++ b/doc/html/buildsystem.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="ProMod3 and Containers" href="container/index.html" />
@@ -36,7 +37,7 @@
<div class="section" id="dependencies">
<h2>Dependencies<a class="headerlink" href="#dependencies" title="Permalink to this headline">¶</a></h2>
<p>ProMod3 is build on top of <a class="reference external" href="https://www.OpenStructure.org">OpenStructure</a> (OST), requiring at least version
-2.2.0. OST must be configured and compiled with <code class="docutils literal notranslate"><span class="pre">ENABLE_MM=1</span></code> to
+2.3.0. OST must be configured and compiled with <code class="docutils literal notranslate"><span class="pre">ENABLE_MM=1</span></code> to
use <a class="reference external" href="https://github.com/openmm/openmm">OpenMM</a>. To create the build system, <a class="reference external" href="https://cmake.org/">CMake</a> is required. The same
versions of <a class="reference external" href="https://www.python.org/">Python</a> and <a class="reference external" href="https://www.boost.org/">Boost</a> are needed as used in OST. For <a class="reference external" href="http://eigen.tuxfamily.org/index.php?title=Main_Page">Eigen 3</a>
we need at least version 3.3.0. To build the documentation, <a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> is
@@ -45,7 +46,7 @@ release supporting Python 2.7 is 2.1.0 which also requires OST to be
compiled with Python 2.7.</p>
<p>The currently preferred versions are:</p>
<ul class="simple">
-<li><a class="reference external" href="https://www.OpenStructure.org">OST</a> 2.2.0</li>
+<li><a class="reference external" href="https://www.OpenStructure.org">OST</a> 2.3.0</li>
<li><a class="reference external" href="https://github.com/openmm/openmm">OpenMM</a> 7.1.1</li>
<li><a class="reference external" href="https://cmake.org/">CMake</a> 3.12.1</li>
<li><a class="reference external" href="https://www.python.org/">Python</a> 3.6.0</li>
diff --git a/doc/html/changelog.html b/doc/html/changelog.html
index 0b80d30a..9f00e077 100644
--- a/doc/html/changelog.html
+++ b/doc/html/changelog.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="prev" title="References" href="references.html" />
diff --git a/doc/html/cmake/index.html b/doc/html/cmake/index.html
index d23eb193..a18b6c78 100644
--- a/doc/html/cmake/index.html
+++ b/doc/html/cmake/index.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Using Binary Files In ProMod3" href="../portableIO.html" />
diff --git a/doc/html/container/docker.html b/doc/html/container/docker.html
index 577d8f35..efd454da 100644
--- a/doc/html/container/docker.html
+++ b/doc/html/container/docker.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Singularity" href="singularity.html" />
diff --git a/doc/html/container/index.html b/doc/html/container/index.html
index b2acf949..1cd6fb1b 100644
--- a/doc/html/container/index.html
+++ b/doc/html/container/index.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Docker" href="docker.html" />
diff --git a/doc/html/container/singularity.html b/doc/html/container/singularity.html
index 822589ad..61c1dc21 100644
--- a/doc/html/container/singularity.html
+++ b/doc/html/container/singularity.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="modelling - Protein Modelling" href="../modelling/index.html" />
diff --git a/doc/html/contributing.html b/doc/html/contributing.html
index 9a91958b..9f612109 100644
--- a/doc/html/contributing.html
+++ b/doc/html/contributing.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="test_actions - Testing Actions" href="actions/index_dev.html" />
diff --git a/doc/html/core/geometry.html b/doc/html/core/geometry.html
index 0bd556db..4db119f6 100644
--- a/doc/html/core/geometry.html
+++ b/doc/html/core/geometry.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Runtime profiling" href="runtime_profiling.html" />
diff --git a/doc/html/core/graph_minimizer.html b/doc/html/core/graph_minimizer.html
index 67f27f5c..1d1d0b3a 100644
--- a/doc/html/core/graph_minimizer.html
+++ b/doc/html/core/graph_minimizer.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="SetCompoundsChemlib()" href="setcompoundschemlib.html" />
diff --git a/doc/html/core/helper.html b/doc/html/core/helper.html
index f3c67939..6abb2303 100644
--- a/doc/html/core/helper.html
+++ b/doc/html/core/helper.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Geometry functions" href="geometry.html" />
diff --git a/doc/html/core/index.html b/doc/html/core/index.html
index c004384d..551c8911 100644
--- a/doc/html/core/index.html
+++ b/doc/html/core/index.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="pm3argparse - Parsing Command Lines" href="pm3argparse.html" />
diff --git a/doc/html/core/pm3argparse.html b/doc/html/core/pm3argparse.html
index 03f4e0f5..ad588482 100644
--- a/doc/html/core/pm3argparse.html
+++ b/doc/html/core/pm3argparse.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="helper - Shared Functionality For the Everything" href="helper.html" />
diff --git a/doc/html/core/runtime_profiling.html b/doc/html/core/runtime_profiling.html
index 73327fdf..795b6c9f 100644
--- a/doc/html/core/runtime_profiling.html
+++ b/doc/html/core/runtime_profiling.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Graph Minimizer" href="graph_minimizer.html" />
diff --git a/doc/html/core/setcompoundschemlib.html b/doc/html/core/setcompoundschemlib.html
index e8be91c6..f6cbb73e 100644
--- a/doc/html/core/setcompoundschemlib.html
+++ b/doc/html/core/setcompoundschemlib.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Contributing" href="../user_contributions.html" />
diff --git a/doc/html/dev_setup.html b/doc/html/dev_setup.html
index 2f8b193b..2a060c73 100644
--- a/doc/html/dev_setup.html
+++ b/doc/html/dev_setup.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Contributing" href="contributing.html" />
diff --git a/doc/html/developers.html b/doc/html/developers.html
index 992e567b..7084fede 100644
--- a/doc/html/developers.html
+++ b/doc/html/developers.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="ProMod3 Setup" href="dev_setup.html" />
diff --git a/doc/html/genindex.html b/doc/html/genindex.html
index 35f7a0f4..5ef68c4b 100644
--- a/doc/html/genindex.html
+++ b/doc/html/genindex.html
@@ -15,6 +15,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="#" />
<link rel="search" title="Search" href="search.html" />
diff --git a/doc/html/gettingstarted.html b/doc/html/gettingstarted.html
index 5c0c457f..80a23c32 100644
--- a/doc/html/gettingstarted.html
+++ b/doc/html/gettingstarted.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="ProMod3 Actions" href="actions/index.html" />
diff --git a/doc/html/index.html b/doc/html/index.html
index 8d76841a..48736a0c 100644
--- a/doc/html/index.html
+++ b/doc/html/index.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Documentation For Users" href="users.html" />
diff --git a/doc/html/license.html b/doc/html/license.html
index c403448e..2fa7eaf1 100644
--- a/doc/html/license.html
+++ b/doc/html/license.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="References" href="references.html" />
diff --git a/doc/html/loop/all_atom.html b/doc/html/loop/all_atom.html
index 60fcbb12..f27b4188 100644
--- a/doc/html/loop/all_atom.html
+++ b/doc/html/loop/all_atom.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Generate ost.mol.mm systems" href="mm_system_creation.html" />
diff --git a/doc/html/loop/backbone.html b/doc/html/loop/backbone.html
index ef05adc4..bc203c99 100644
--- a/doc/html/loop/backbone.html
+++ b/doc/html/loop/backbone.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
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diff --git a/doc/html/sidechain/rotamer.html b/doc/html/sidechain/rotamer.html
index a3e419a1..e33eb6e9 100644
--- a/doc/html/sidechain/rotamer.html
+++ b/doc/html/sidechain/rotamer.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Frame - The Rigid Part" href="frame.html" />
diff --git a/doc/html/sidechain/rotamer_constructor.html b/doc/html/sidechain/rotamer_constructor.html
index 4d2c9141..3e5431c2 100644
--- a/doc/html/sidechain/rotamer_constructor.html
+++ b/doc/html/sidechain/rotamer_constructor.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Rotamer Library" href="rotamer_lib.html" />
diff --git a/doc/html/sidechain/rotamer_lib.html b/doc/html/sidechain/rotamer_lib.html
index 5e459c5e..6dd76800 100644
--- a/doc/html/sidechain/rotamer_lib.html
+++ b/doc/html/sidechain/rotamer_lib.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Rotamer Graph" href="graph.html" />
diff --git a/doc/html/sidechain/subrotamer_optimizer.html b/doc/html/sidechain/subrotamer_optimizer.html
index f46fb69b..241f685e 100644
--- a/doc/html/sidechain/subrotamer_optimizer.html
+++ b/doc/html/sidechain/subrotamer_optimizer.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="../genindex.html" />
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diff --git a/doc/html/user_contributions.html b/doc/html/user_contributions.html
index d42afe63..44fd3f6c 100644
--- a/doc/html/user_contributions.html
+++ b/doc/html/user_contributions.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Documentation For Developers" href="developers.html" />
diff --git a/doc/html/users.html b/doc/html/users.html
index c7cbf011..81a37ae0 100644
--- a/doc/html/users.html
+++ b/doc/html/users.html
@@ -14,6 +14,7 @@
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
+ <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Getting Started" href="gettingstarted.html" />
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