From 40cc24c38189ff5da1c71c392bd0a3572259eb5e Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Fri, 31 May 2019 13:01:29 +0200
Subject: [PATCH] fix unit test
---
core/tests/test_pm3argparse.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/core/tests/test_pm3argparse.py b/core/tests/test_pm3argparse.py
index 878008b5..33df7af8 100644
--- a/core/tests/test_pm3argparse.py
+++ b/core/tests/test_pm3argparse.py
@@ -1242,7 +1242,7 @@ class PM3ArgParseTests(unittest.TestCase):
parser.AssembleParser()
opts = parser.Parse(['-f', 'data/aln_tpl/1crn.fasta',
'-f', 'data/aln_tpl/5ua4_B.fasta',
- '--use_fragments'])
+ '--use-fragments'])
self.assertEqual(len(opts.alignments), 2)
self.assertEqual(len(opts.fragger_handles), 2)
self.assertEqual(opts.alignments[0].GetSequence(0).GetGaplessString(),
@@ -1271,7 +1271,7 @@ class PM3ArgParseTests(unittest.TestCase):
'-f', 'data/aln_tpl/5ua4_B.fasta',
'-s', 'data/aln_tpl/1crn.hhm',
'-s', 'data/aln_tpl/5ua4_B.hhm',
- '--use_fragments'])
+ '--use-fragments'])
self.assertEqual(len(opts.alignments), 2)
self.assertEqual(len(opts.fragger_handles), 2)
self.assertEqual(opts.alignments[0].GetSequence(0).GetGaplessString(),
--
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