From 40dcc42e0e0c195b253b9ff6c5b2c80cca68c432 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Mon, 10 Aug 2015 17:49:54 +0200
Subject: [PATCH] Fixed documentation

---
 core/doc/argcheck.rst    | 8 +++++---
 core/doc/pm3argparse.rst | 2 ++
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/core/doc/argcheck.rst b/core/doc/argcheck.rst
index 53f517f1..b9a35a62 100644
--- a/core/doc/argcheck.rst
+++ b/core/doc/argcheck.rst
@@ -9,8 +9,8 @@ Introduction
 For parsing command line arguments -
 :py_docs:`optional <howto/argparse.html#introducing-optional-arguments>` and
 :py_docs:`positional <howto/argparse.html#introducing-positional-arguments>` -
-|project| tools should utilise Pythons own
-:py_docs:`argparse <library/argparse.html>` module. While this comes with a lot
+|project| tools should utilise its own
+:mod:`~promod3.core.pm3argparse` module. While this comes with a lot
 of functionality to fetch values from the command line comfortably, it has no
 means in checking/ verifying input. Some of the most common tests are covered
 here. All tests are designed to exit a script on failure.
@@ -63,4 +63,6 @@ File Tests
 
 .. autofunction:: FileExtension
 
-..  LocalWords:  currentmodule py howto argparse
+..  LocalWords:  currentmodule py howto argparse testcode argcheck os promod
+..  LocalWords:  tempfile fh fn ArgumentParser str args FileExists gz pdb
+..  LocalWords:  FileExtension mmcif doctest autofunction
diff --git a/core/doc/pm3argparse.rst b/core/doc/pm3argparse.rst
index 359b6755..43e05c12 100644
--- a/core/doc/pm3argparse.rst
+++ b/core/doc/pm3argparse.rst
@@ -3,6 +3,8 @@
 
 .. currentmodule:: promod3.core.pm3argparse
 
+.. module:: promod3.core.pm3argparse
+
 Introduction
 --------------------------------------------------------------------------------
 
-- 
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