From 493d9e6a4380c195176577ed357102e3654b437f Mon Sep 17 00:00:00 2001 From: Stefan Bienert <stefan.bienert@unibas.ch> Date: Wed, 12 Feb 2020 16:26:02 +0100 Subject: [PATCH] Bump scoring module to (c) 2020 --- scoring/data/convert_binaries.py | 2 +- scoring/doc/all_atom_scorers.rst | 2 +- scoring/doc/backbone_score_env.rst | 2 +- scoring/doc/backbone_scorers.rst | 2 +- scoring/doc/index.rst | 2 +- scoring/doc/other_scoring_functions.rst | 2 +- scoring/pymod/__init__.py | 2 +- scoring/pymod/export_all_atom_score.cc | 2 +- scoring/pymod/export_backbone_score.cc | 2 +- scoring/pymod/export_constraint_constructor.cc | 2 +- scoring/pymod/export_density_scorer.cc | 2 +- scoring/pymod/export_object_loader.cc | 2 +- scoring/pymod/export_pairwise_functions.cc | 2 +- scoring/pymod/export_scwrl3_energy_functions.cc | 2 +- scoring/pymod/wrap_scoring.cc | 2 +- scoring/src/all_atom_clash_score.cc | 2 +- scoring/src/all_atom_clash_score.hh | 2 +- scoring/src/all_atom_interaction_env_listener.cc | 2 +- scoring/src/all_atom_interaction_env_listener.hh | 2 +- scoring/src/all_atom_interaction_score.cc | 2 +- scoring/src/all_atom_interaction_score.hh | 2 +- scoring/src/all_atom_overall_scorer.cc | 2 +- scoring/src/all_atom_overall_scorer.hh | 2 +- scoring/src/all_atom_packing_score.cc | 2 +- scoring/src/all_atom_packing_score.hh | 2 +- scoring/src/all_atom_score_base.hh | 2 +- scoring/src/backbone_overall_scorer.cc | 2 +- scoring/src/backbone_overall_scorer.hh | 2 +- scoring/src/backbone_score_base.cc | 2 +- scoring/src/backbone_score_base.hh | 2 +- scoring/src/cb_packing_score.cc | 2 +- scoring/src/cb_packing_score.hh | 2 +- scoring/src/cbeta_env_listener.cc | 2 +- scoring/src/cbeta_env_listener.hh | 2 +- scoring/src/cbeta_score.cc | 2 +- scoring/src/cbeta_score.hh | 2 +- scoring/src/clash_env_listener.cc | 2 +- scoring/src/clash_env_listener.hh | 2 +- scoring/src/clash_score.cc | 2 +- scoring/src/clash_score.hh | 2 +- scoring/src/constraint_constructor.cc | 2 +- scoring/src/constraint_constructor.hh | 2 +- scoring/src/density_score.cc | 2 +- scoring/src/density_score.hh | 2 +- scoring/src/hbond_env_listener.cc | 2 +- scoring/src/hbond_env_listener.hh | 2 +- scoring/src/hbond_score.cc | 2 +- scoring/src/hbond_score.hh | 2 +- scoring/src/pairwise_score.cc | 2 +- scoring/src/pairwise_score.hh | 2 +- scoring/src/pairwise_scoring_function.hh | 2 +- scoring/src/reduced_env_listener.cc | 2 +- scoring/src/reduced_env_listener.hh | 2 +- scoring/src/reduced_score.cc | 2 +- scoring/src/reduced_score.hh | 2 +- scoring/src/scoring_object_loader.cc | 2 +- scoring/src/scoring_object_loader.hh | 2 +- scoring/src/scwrl3_energy_functions.hh | 2 +- scoring/src/ss_agreement_env_listener.cc | 2 +- scoring/src/ss_agreement_env_listener.hh | 2 +- scoring/src/ss_agreement_score.cc | 2 +- scoring/src/ss_agreement_score.hh | 2 +- scoring/src/torsion_score.cc | 2 +- scoring/src/torsion_score.hh | 2 +- scoring/tests/test_all_atom_scorer.cc | 2 +- scoring/tests/test_backbone_score_base.cc | 2 +- scoring/tests/test_backbone_scorer.cc | 2 +- scoring/tests/tests.cc | 2 +- scripts/pm.in | 2 +- 69 files changed, 69 insertions(+), 69 deletions(-) diff --git a/scoring/data/convert_binaries.py b/scoring/data/convert_binaries.py index bf80e53e..5687c2fc 100644 --- a/scoring/data/convert_binaries.py +++ b/scoring/data/convert_binaries.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/doc/all_atom_scorers.rst b/scoring/doc/all_atom_scorers.rst index bcb3cdc4..65c2b942 100644 --- a/scoring/doc/all_atom_scorers.rst +++ b/scoring/doc/all_atom_scorers.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/doc/backbone_score_env.rst b/scoring/doc/backbone_score_env.rst index 11ea33ce..05d5649a 100644 --- a/scoring/doc/backbone_score_env.rst +++ b/scoring/doc/backbone_score_env.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/doc/backbone_scorers.rst b/scoring/doc/backbone_scorers.rst index 68a45cab..35c3573d 100644 --- a/scoring/doc/backbone_scorers.rst +++ b/scoring/doc/backbone_scorers.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/doc/index.rst b/scoring/doc/index.rst index d21154f0..f8210f7a 100644 --- a/scoring/doc/index.rst +++ b/scoring/doc/index.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/doc/other_scoring_functions.rst b/scoring/doc/other_scoring_functions.rst index 80487531..5db6fa73 100644 --- a/scoring/doc/other_scoring_functions.rst +++ b/scoring/doc/other_scoring_functions.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/__init__.py b/scoring/pymod/__init__.py index 8c2d45f1..35e834c9 100644 --- a/scoring/pymod/__init__.py +++ b/scoring/pymod/__init__.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_all_atom_score.cc b/scoring/pymod/export_all_atom_score.cc index a3990a88..8213a480 100644 --- a/scoring/pymod/export_all_atom_score.cc +++ b/scoring/pymod/export_all_atom_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_backbone_score.cc b/scoring/pymod/export_backbone_score.cc index 78722280..b22b0aee 100644 --- a/scoring/pymod/export_backbone_score.cc +++ b/scoring/pymod/export_backbone_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_constraint_constructor.cc b/scoring/pymod/export_constraint_constructor.cc index 0005e736..17a081ad 100644 --- a/scoring/pymod/export_constraint_constructor.cc +++ b/scoring/pymod/export_constraint_constructor.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_density_scorer.cc b/scoring/pymod/export_density_scorer.cc index b887a2da..79bf0dd2 100644 --- a/scoring/pymod/export_density_scorer.cc +++ b/scoring/pymod/export_density_scorer.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_object_loader.cc b/scoring/pymod/export_object_loader.cc index 7c479132..9a1e427a 100644 --- a/scoring/pymod/export_object_loader.cc +++ b/scoring/pymod/export_object_loader.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_pairwise_functions.cc b/scoring/pymod/export_pairwise_functions.cc index 4aa5bfc1..a83af705 100644 --- a/scoring/pymod/export_pairwise_functions.cc +++ b/scoring/pymod/export_pairwise_functions.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/export_scwrl3_energy_functions.cc b/scoring/pymod/export_scwrl3_energy_functions.cc index 58136cc8..0dd3caad 100644 --- a/scoring/pymod/export_scwrl3_energy_functions.cc +++ b/scoring/pymod/export_scwrl3_energy_functions.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/pymod/wrap_scoring.cc b/scoring/pymod/wrap_scoring.cc index a162eec0..ee70c11a 100644 --- a/scoring/pymod/wrap_scoring.cc +++ b/scoring/pymod/wrap_scoring.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_clash_score.cc b/scoring/src/all_atom_clash_score.cc index de47faea..73cfe3ec 100644 --- a/scoring/src/all_atom_clash_score.cc +++ b/scoring/src/all_atom_clash_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_clash_score.hh b/scoring/src/all_atom_clash_score.hh index 39f0ae6b..0ff0fe3e 100644 --- a/scoring/src/all_atom_clash_score.hh +++ b/scoring/src/all_atom_clash_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_interaction_env_listener.cc b/scoring/src/all_atom_interaction_env_listener.cc index c5cff244..d0ae440f 100644 --- a/scoring/src/all_atom_interaction_env_listener.cc +++ b/scoring/src/all_atom_interaction_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_interaction_env_listener.hh b/scoring/src/all_atom_interaction_env_listener.hh index bf6f800b..b60d96fc 100644 --- a/scoring/src/all_atom_interaction_env_listener.hh +++ b/scoring/src/all_atom_interaction_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_interaction_score.cc b/scoring/src/all_atom_interaction_score.cc index 2ccc192e..66e87cff 100644 --- a/scoring/src/all_atom_interaction_score.cc +++ b/scoring/src/all_atom_interaction_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_interaction_score.hh b/scoring/src/all_atom_interaction_score.hh index 0e2166a1..e9a6aa4f 100644 --- a/scoring/src/all_atom_interaction_score.hh +++ b/scoring/src/all_atom_interaction_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_overall_scorer.cc b/scoring/src/all_atom_overall_scorer.cc index 891fa944..698997e5 100644 --- a/scoring/src/all_atom_overall_scorer.cc +++ b/scoring/src/all_atom_overall_scorer.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_overall_scorer.hh b/scoring/src/all_atom_overall_scorer.hh index 81770d34..bc6b056f 100644 --- a/scoring/src/all_atom_overall_scorer.hh +++ b/scoring/src/all_atom_overall_scorer.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_packing_score.cc b/scoring/src/all_atom_packing_score.cc index 786ba860..f614ebbe 100644 --- a/scoring/src/all_atom_packing_score.cc +++ b/scoring/src/all_atom_packing_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_packing_score.hh b/scoring/src/all_atom_packing_score.hh index 899b6b1c..aea2cdd5 100644 --- a/scoring/src/all_atom_packing_score.hh +++ b/scoring/src/all_atom_packing_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/all_atom_score_base.hh b/scoring/src/all_atom_score_base.hh index abf7100e..63e1ba9f 100644 --- a/scoring/src/all_atom_score_base.hh +++ b/scoring/src/all_atom_score_base.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/backbone_overall_scorer.cc b/scoring/src/backbone_overall_scorer.cc index 5af0d12f..ff0a8fe6 100644 --- a/scoring/src/backbone_overall_scorer.cc +++ b/scoring/src/backbone_overall_scorer.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/backbone_overall_scorer.hh b/scoring/src/backbone_overall_scorer.hh index 61db071b..0094ca76 100644 --- a/scoring/src/backbone_overall_scorer.hh +++ b/scoring/src/backbone_overall_scorer.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/backbone_score_base.cc b/scoring/src/backbone_score_base.cc index 05ab6238..27d70cb3 100644 --- a/scoring/src/backbone_score_base.cc +++ b/scoring/src/backbone_score_base.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/backbone_score_base.hh b/scoring/src/backbone_score_base.hh index 0b8ad73d..a9462c78 100644 --- a/scoring/src/backbone_score_base.hh +++ b/scoring/src/backbone_score_base.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cb_packing_score.cc b/scoring/src/cb_packing_score.cc index 5d98abc3..6588dd6c 100644 --- a/scoring/src/cb_packing_score.cc +++ b/scoring/src/cb_packing_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cb_packing_score.hh b/scoring/src/cb_packing_score.hh index 97772e27..657fdaef 100644 --- a/scoring/src/cb_packing_score.hh +++ b/scoring/src/cb_packing_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cbeta_env_listener.cc b/scoring/src/cbeta_env_listener.cc index 9bb3021a..30efa251 100644 --- a/scoring/src/cbeta_env_listener.cc +++ b/scoring/src/cbeta_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cbeta_env_listener.hh b/scoring/src/cbeta_env_listener.hh index fd86b4e0..37c94a96 100644 --- a/scoring/src/cbeta_env_listener.hh +++ b/scoring/src/cbeta_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cbeta_score.cc b/scoring/src/cbeta_score.cc index 17eb90f8..27e1dba3 100644 --- a/scoring/src/cbeta_score.cc +++ b/scoring/src/cbeta_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/cbeta_score.hh b/scoring/src/cbeta_score.hh index 2a4cb7b6..16763f46 100644 --- a/scoring/src/cbeta_score.hh +++ b/scoring/src/cbeta_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/clash_env_listener.cc b/scoring/src/clash_env_listener.cc index f9ff0638..ef5ee4f7 100644 --- a/scoring/src/clash_env_listener.cc +++ b/scoring/src/clash_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/clash_env_listener.hh b/scoring/src/clash_env_listener.hh index 3d8c121c..ca7b2e50 100644 --- a/scoring/src/clash_env_listener.hh +++ b/scoring/src/clash_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/clash_score.cc b/scoring/src/clash_score.cc index f0589dc7..a918693f 100644 --- a/scoring/src/clash_score.cc +++ b/scoring/src/clash_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/clash_score.hh b/scoring/src/clash_score.hh index 23251cc6..5f40efc1 100644 --- a/scoring/src/clash_score.hh +++ b/scoring/src/clash_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/constraint_constructor.cc b/scoring/src/constraint_constructor.cc index 127b78ae..2a339a86 100644 --- a/scoring/src/constraint_constructor.cc +++ b/scoring/src/constraint_constructor.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/constraint_constructor.hh b/scoring/src/constraint_constructor.hh index 75e2b393..b9eae570 100644 --- a/scoring/src/constraint_constructor.hh +++ b/scoring/src/constraint_constructor.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/density_score.cc b/scoring/src/density_score.cc index 7ad2daac..3e4c1f4b 100644 --- a/scoring/src/density_score.cc +++ b/scoring/src/density_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/density_score.hh b/scoring/src/density_score.hh index fe698cd3..a05fde4b 100644 --- a/scoring/src/density_score.hh +++ b/scoring/src/density_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/hbond_env_listener.cc b/scoring/src/hbond_env_listener.cc index afe63391..70c9a10b 100644 --- a/scoring/src/hbond_env_listener.cc +++ b/scoring/src/hbond_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/hbond_env_listener.hh b/scoring/src/hbond_env_listener.hh index 7b45cdc6..8ef4dde8 100644 --- a/scoring/src/hbond_env_listener.hh +++ b/scoring/src/hbond_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/hbond_score.cc b/scoring/src/hbond_score.cc index e7955422..b8a04d30 100644 --- a/scoring/src/hbond_score.cc +++ b/scoring/src/hbond_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/hbond_score.hh b/scoring/src/hbond_score.hh index 895e93d4..f3f7b4b1 100644 --- a/scoring/src/hbond_score.hh +++ b/scoring/src/hbond_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/pairwise_score.cc b/scoring/src/pairwise_score.cc index fd8f6c42..5545d97a 100644 --- a/scoring/src/pairwise_score.cc +++ b/scoring/src/pairwise_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/pairwise_score.hh b/scoring/src/pairwise_score.hh index 60c59f86..587e8d5b 100644 --- a/scoring/src/pairwise_score.hh +++ b/scoring/src/pairwise_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/pairwise_scoring_function.hh b/scoring/src/pairwise_scoring_function.hh index 823f4455..2965121b 100644 --- a/scoring/src/pairwise_scoring_function.hh +++ b/scoring/src/pairwise_scoring_function.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/reduced_env_listener.cc b/scoring/src/reduced_env_listener.cc index 1d52b029..04bda667 100644 --- a/scoring/src/reduced_env_listener.cc +++ b/scoring/src/reduced_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/reduced_env_listener.hh b/scoring/src/reduced_env_listener.hh index 1cfce4d8..1bceb3ad 100644 --- a/scoring/src/reduced_env_listener.hh +++ b/scoring/src/reduced_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/reduced_score.cc b/scoring/src/reduced_score.cc index c0b9b245..47cd21a7 100644 --- a/scoring/src/reduced_score.cc +++ b/scoring/src/reduced_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/reduced_score.hh b/scoring/src/reduced_score.hh index bcfa0272..1e53e8cb 100644 --- a/scoring/src/reduced_score.hh +++ b/scoring/src/reduced_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/scoring_object_loader.cc b/scoring/src/scoring_object_loader.cc index 563e679b..a5827f29 100644 --- a/scoring/src/scoring_object_loader.cc +++ b/scoring/src/scoring_object_loader.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/scoring_object_loader.hh b/scoring/src/scoring_object_loader.hh index 62ab321c..f13b575c 100644 --- a/scoring/src/scoring_object_loader.hh +++ b/scoring/src/scoring_object_loader.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/scwrl3_energy_functions.hh b/scoring/src/scwrl3_energy_functions.hh index 2829e91b..a9297a65 100644 --- a/scoring/src/scwrl3_energy_functions.hh +++ b/scoring/src/scwrl3_energy_functions.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/ss_agreement_env_listener.cc b/scoring/src/ss_agreement_env_listener.cc index 5350a8ba..d3753f78 100644 --- a/scoring/src/ss_agreement_env_listener.cc +++ b/scoring/src/ss_agreement_env_listener.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/ss_agreement_env_listener.hh b/scoring/src/ss_agreement_env_listener.hh index 775099fc..3d6ec433 100644 --- a/scoring/src/ss_agreement_env_listener.hh +++ b/scoring/src/ss_agreement_env_listener.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/ss_agreement_score.cc b/scoring/src/ss_agreement_score.cc index cf92f38e..dbbc4dcc 100644 --- a/scoring/src/ss_agreement_score.cc +++ b/scoring/src/ss_agreement_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/ss_agreement_score.hh b/scoring/src/ss_agreement_score.hh index a34698d8..d92883f3 100644 --- a/scoring/src/ss_agreement_score.hh +++ b/scoring/src/ss_agreement_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/torsion_score.cc b/scoring/src/torsion_score.cc index 22907b15..ec2c09a3 100644 --- a/scoring/src/torsion_score.cc +++ b/scoring/src/torsion_score.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/src/torsion_score.hh b/scoring/src/torsion_score.hh index d80c42d5..6efa2955 100644 --- a/scoring/src/torsion_score.hh +++ b/scoring/src/torsion_score.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/tests/test_all_atom_scorer.cc b/scoring/tests/test_all_atom_scorer.cc index d845b453..465b0221 100644 --- a/scoring/tests/test_all_atom_scorer.cc +++ b/scoring/tests/test_all_atom_scorer.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/tests/test_backbone_score_base.cc b/scoring/tests/test_backbone_score_base.cc index 73bf2fc6..50a88566 100644 --- a/scoring/tests/test_backbone_score_base.cc +++ b/scoring/tests/test_backbone_score_base.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/tests/test_backbone_scorer.cc b/scoring/tests/test_backbone_scorer.cc index f4bab973..d8377e74 100644 --- a/scoring/tests/test_backbone_scorer.cc +++ b/scoring/tests/test_backbone_scorer.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scoring/tests/tests.cc b/scoring/tests/tests.cc index ae452950..be55edbb 100644 --- a/scoring/tests/tests.cc +++ b/scoring/tests/tests.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/scripts/pm.in b/scripts/pm.in index 61742adb..d7c7e190 100755 --- a/scripts/pm.in +++ b/scripts/pm.in @@ -1,6 +1,6 @@ #!/bin/bash -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); -- GitLab