From 5267277b6ec219e2ceca085e9ab819818bb809cc Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Mon, 11 Aug 2014 12:00:22 +0200
Subject: [PATCH] Updated documentation
---
doc/html/_modules/index.html | 2 +-
doc/html/_modules/promod3/core/argcheck.html | 2 +-
doc/html/_sources/buildsystem.txt | 9 +++++++--
doc/html/buildsystem.html | 6 ++++--
doc/html/developers.html | 2 +-
doc/html/genindex.html | 2 +-
doc/html/index.html | 2 +-
doc/html/py-modindex.html | 2 +-
doc/html/search.html | 2 +-
doc/html/searchindex.js | 2 +-
10 files changed, 19 insertions(+), 12 deletions(-)
diff --git a/doc/html/_modules/index.html b/doc/html/_modules/index.html
index 9076ce69..49c9c6c3 100644
--- a/doc/html/_modules/index.html
+++ b/doc/html/_modules/index.html
@@ -85,7 +85,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/_modules/promod3/core/argcheck.html b/doc/html/_modules/promod3/core/argcheck.html
index 394659cd..4fb0e22d 100644
--- a/doc/html/_modules/promod3/core/argcheck.html
+++ b/doc/html/_modules/promod3/core/argcheck.html
@@ -193,7 +193,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/_sources/buildsystem.txt b/doc/html/_sources/buildsystem.txt
index 810c7811..b6f3b861 100644
--- a/doc/html/_sources/buildsystem.txt
+++ b/doc/html/_sources/buildsystem.txt
@@ -7,7 +7,8 @@ Dependencies
1.4, and |qmean|_. To create the build system, |cmake|_ is required in version
2.8.7 or higher. |python|_ works well from version 2.7. For |ost_s| and the
|C++| bit of |project|, |boost|_ is required in version 1.47.0 (the same as
-used for |ost_s|). Also |eigen3|_, at least version 3.2.1, is needed. To build documentation, |sphinx|_ 1.2b1 is used.
+used for |ost_s|). Also |eigen3|_ and |lapack|_ are needed. To build
+documentation, |sphinx|_ 1.2b1 is used.
* |ost_s|_ 1.4
* |qmean|_
@@ -16,6 +17,7 @@ used for |ost_s|). Also |eigen3|_, at least version 3.2.1, is needed. To build d
* |boost|_ 1.47.0
* |sphinx|_ 1.2b1
* |eigen3|_ 3.2.1
+* |lapack|_ 3.0
--------------------------------------------------------------------------------
Using |cmake|
@@ -98,12 +100,15 @@ special targets:
.. |qmean| replace:: QMEAN
.. |eigen3| replace:: Eigen 3
+.. |lapack| replace:: LAPACK
.. _qmean: http://swissmodel.expasy.org/qmean/cgi/index.cgi?
.. _ost_l: http://www.OpenStructure.org
.. _cmake: http://www.cmake.org/
.. _python: https://www.python.org/
.. _boost: http://www.boost.org/
.. _eigen3: http://eigen.tuxfamily.org/
+.. _lapack: http://www.netlib.org/lapack/
.. LocalWords: cmake makefiles CMakeLists txt DOCTEST LINKCHECK conf html
-.. LocalWords: doctest linkcheck qmean DQMEAN eigen CMakeCache
+.. LocalWords: doctest linkcheck qmean DQMEAN eigen CMakeCache lapack
+.. LocalWords: OPTIMIZE
diff --git a/doc/html/buildsystem.html b/doc/html/buildsystem.html
index cba83fe7..9255a447 100644
--- a/doc/html/buildsystem.html
+++ b/doc/html/buildsystem.html
@@ -62,7 +62,8 @@
1.4, and <a class="reference external" href="http://swissmodel.expasy.org/qmean/cgi/index.cgi?">QMEAN</a>. To create the build system, <a class="reference external" href="http://www.cmake.org/">CMake</a> is required in version
2.8.7 or higher. <a class="reference external" href="https://www.python.org/">Python</a> works well from version 2.7. For OST and the
C++ bit of ProMod3, <a class="reference external" href="http://www.boost.org/">Boost</a> is required in version 1.47.0 (the same as
-used for OST). Also <a class="reference external" href="http://eigen.tuxfamily.org/">Eigen 3</a>, at least version 3.2.1, is needed. To build documentation, <a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> 1.2b1 is used.</p>
+used for OST). Also <a class="reference external" href="http://eigen.tuxfamily.org/">Eigen 3</a> and <a class="reference external" href="http://www.netlib.org/lapack/">LAPACK</a> are needed. To build
+documentation, <a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> 1.2b1 is used.</p>
<ul class="simple">
<li><a class="reference external" href="http://www.OpenStructure.org">OST</a> 1.4</li>
<li><a class="reference external" href="http://swissmodel.expasy.org/qmean/cgi/index.cgi?">QMEAN</a></li>
@@ -71,6 +72,7 @@ used for OST). Also <a class="reference external" href="http://eigen.tuxfamily.o
<li><a class="reference external" href="http://www.boost.org/">Boost</a> 1.47.0</li>
<li><a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> 1.2b1</li>
<li><a class="reference external" href="http://eigen.tuxfamily.org/">Eigen 3</a> 3.2.1</li>
+<li><a class="reference external" href="http://www.netlib.org/lapack/">LAPACK</a> 3.0</li>
</ul>
</div>
<div class="section" id="using-cmake">
@@ -210,7 +212,7 @@ builder</li>
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/developers.html b/doc/html/developers.html
index f49d52d8..0b6aa23b 100644
--- a/doc/html/developers.html
+++ b/doc/html/developers.html
@@ -140,7 +140,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/genindex.html b/doc/html/genindex.html
index 68a5a687..a70a13b2 100644
--- a/doc/html/genindex.html
+++ b/doc/html/genindex.html
@@ -334,7 +334,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/index.html b/doc/html/index.html
index 64999921..e22fde9c 100644
--- a/doc/html/index.html
+++ b/doc/html/index.html
@@ -134,7 +134,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/py-modindex.html b/doc/html/py-modindex.html
index 78656b0c..98081f3e 100644
--- a/doc/html/py-modindex.html
+++ b/doc/html/py-modindex.html
@@ -113,7 +113,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/search.html b/doc/html/search.html
index dfa8cb3d..2662ebc5 100644
--- a/doc/html/search.html
+++ b/doc/html/search.html
@@ -99,7 +99,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Aug 11 10:54, 2014.
+ Last updated on Aug 11 11:59, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/searchindex.js b/doc/html/searchindex.js
index 1cf83e97..9d5e7657 100644
--- a/doc/html/searchindex.js
+++ b/doc/html/searchindex.js
@@ -1 +1 @@
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