diff --git a/container/Dockerfile b/container/Dockerfile index 0c09764e0aa41eb103d03d869efa9c85207ff4d0..20a1c805c7d3b0d6ffbd7bfe929fec6dd7ff2034 100644 --- a/container/Dockerfile +++ b/container/Dockerfile @@ -1,4 +1,4 @@ -ARG OPENSTRUCTURE_IMAGE_TAG="2.2.0-bionic" +ARG OPENSTRUCTURE_IMAGE_TAG="2.2.0-focal" FROM registry.scicore.unibas.ch/schwede/openstructure:${OPENSTRUCTURE_IMAGE_TAG} # ARGUMENTS diff --git a/container/Singularity b/container/Singularity index 6932ddfdc129c5e1ee0f1cd217c5ee63df41f955..ccb464c7d6ce0fcbc58a7ef5db54a1eb4a068e79 100644 --- a/container/Singularity +++ b/container/Singularity @@ -1,5 +1,5 @@ BootStrap: docker -From: registry.scicore.unibas.ch/schwede/promod3:3.2.0-OST2.2.0-bionic +From: registry.scicore.unibas.ch/schwede/promod3:3.2.0-OST2.2.0-focal %post ############################################################################## # POST @@ -42,7 +42,7 @@ cat > $JUPYTER_PATH/kernels/ost-kernel/kernel.json <<EOF "-m", "ipykernel", "-f", "{connection_file}", "--InteractiveShellApp.exec_PYTHONSTARTUP=False", - "--InteractiveShellApp.exec_files=['/usr/local/lib64/python3.6/site-packages/ost/ost_startup.py']" + "--InteractiveShellApp.exec_files=['/usr/local/lib64/python3.8/site-packages/ost/ost_startup.py']" ], "env": { } @@ -200,7 +200,7 @@ and goes to CWD. Thus this sould work as expected out of the box. # NOTEBOOK ENV ############################################################################## export DNG_ROOT=$OST_ROOT -export DNG_INITDIR=${DNG_ROOT}/lib64/python3.6/site-packages/ost +export DNG_INITDIR=${DNG_ROOT}/lib64/python3.8/site-packages/ost %apprun IPython