From 8855768a9854473fd503ec8e1f2f9bc616d4f17a Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Tue, 11 Sep 2018 19:44:10 +0200
Subject: [PATCH] The year is 2018
---
doc/conf.py.in | 2 +-
doc/html/_modules/index.html | 2 +-
doc/html/_modules/promod3.html | 2 +-
doc/html/_modules/promod3/core/helper.html | 2 +-
doc/html/_modules/promod3/core/pm3argparse.html | 2 +-
doc/html/_modules/promod3/modelling/_closegaps.html | 2 +-
doc/html/_modules/promod3/modelling/_denovo.html | 2 +-
doc/html/_modules/promod3/modelling/_fragger_handle.html | 2 +-
doc/html/_modules/promod3/modelling/_molprobity.html | 2 +-
doc/html/_modules/promod3/modelling/_pipeline.html | 2 +-
.../_modules/promod3/modelling/_reconstruct_sidechains.html | 2 +-
doc/html/_modules/promod3/modelling/_ring_punches.html | 2 +-
doc/html/_modules/test_actions.html | 2 +-
doc/html/actions/index.html | 2 +-
doc/html/actions/index_dev.html | 2 +-
doc/html/buildsystem.html | 2 +-
doc/html/changelog.html | 2 +-
doc/html/cmake/index.html | 2 +-
doc/html/contributing.html | 2 +-
doc/html/core/geometry.html | 2 +-
doc/html/core/graph_minimizer.html | 2 +-
doc/html/core/helper.html | 2 +-
doc/html/core/index.html | 2 +-
doc/html/core/pm3argparse.html | 2 +-
doc/html/core/runtime_profiling.html | 2 +-
doc/html/core/setcompoundschemlib.html | 2 +-
doc/html/dev_setup.html | 2 +-
doc/html/developers.html | 2 +-
doc/html/genindex.html | 2 +-
doc/html/gettingstarted.html | 2 +-
doc/html/index.html | 2 +-
doc/html/loop/all_atom.html | 2 +-
doc/html/loop/backbone.html | 2 +-
doc/html/loop/index.html | 2 +-
doc/html/loop/load_loop_objects.html | 2 +-
doc/html/loop/mm_system_creation.html | 2 +-
doc/html/loop/structure_db.html | 2 +-
doc/html/loop/torsion_sampler.html | 2 +-
doc/html/modelling/algorithms.html | 2 +-
doc/html/modelling/gap_handling.html | 2 +-
doc/html/modelling/index.html | 2 +-
doc/html/modelling/loop_candidates.html | 2 +-
doc/html/modelling/loop_closing.html | 2 +-
doc/html/modelling/model_checking.html | 2 +-
doc/html/modelling/monte_carlo.html | 2 +-
doc/html/modelling/pipeline.html | 2 +-
doc/html/modelling/sidechain_reconstruction.html | 2 +-
doc/html/portableIO.html | 2 +-
doc/html/py-modindex.html | 2 +-
doc/html/scoring/all_atom_scorers.html | 2 +-
doc/html/scoring/backbone_score_env.html | 2 +-
doc/html/scoring/backbone_scorers.html | 2 +-
doc/html/scoring/index.html | 2 +-
doc/html/scoring/other_scoring_functions.html | 2 +-
doc/html/search.html | 2 +-
doc/html/sidechain/disulfid.html | 2 +-
doc/html/sidechain/frame.html | 2 +-
doc/html/sidechain/graph.html | 2 +-
doc/html/sidechain/index.html | 2 +-
doc/html/sidechain/loading.html | 2 +-
doc/html/sidechain/rotamer.html | 2 +-
doc/html/sidechain/rotamer_constructor.html | 2 +-
doc/html/sidechain/rotamer_id.html | 2 +-
doc/html/sidechain/rotamer_lib.html | 2 +-
doc/html/sidechain/subrotamer_optimizer.html | 2 +-
doc/html/users.html | 2 +-
66 files changed, 66 insertions(+), 66 deletions(-)
diff --git a/doc/conf.py.in b/doc/conf.py.in
index fddcc7ef..1219c73e 100644
--- a/doc/conf.py.in
+++ b/doc/conf.py.in
@@ -59,7 +59,7 @@ master_doc = 'index'
# General information about the project.
project = u'ProMod3'
-copyright = u'2017, ProMod3 authors'# pylint: disable=redefined-builtin
+copyright = u'2018, ProMod3 authors'# pylint: disable=redefined-builtin
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
diff --git a/doc/html/_modules/index.html b/doc/html/_modules/index.html
index 14ae5c46..6964cf96 100644
--- a/doc/html/_modules/index.html
+++ b/doc/html/_modules/index.html
@@ -146,7 +146,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3.html b/doc/html/_modules/promod3.html
index 56ad569c..140c70b9 100644
--- a/doc/html/_modules/promod3.html
+++ b/doc/html/_modules/promod3.html
@@ -146,7 +146,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/core/helper.html b/doc/html/_modules/promod3/core/helper.html
index 83075715..2266f1a3 100644
--- a/doc/html/_modules/promod3/core/helper.html
+++ b/doc/html/_modules/promod3/core/helper.html
@@ -231,7 +231,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/core/pm3argparse.html b/doc/html/_modules/promod3/core/pm3argparse.html
index c1d0b98a..e10fff03 100644
--- a/doc/html/_modules/promod3/core/pm3argparse.html
+++ b/doc/html/_modules/promod3/core/pm3argparse.html
@@ -725,7 +725,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_closegaps.html b/doc/html/_modules/promod3/modelling/_closegaps.html
index 274675b5..85c8c033 100644
--- a/doc/html/_modules/promod3/modelling/_closegaps.html
+++ b/doc/html/_modules/promod3/modelling/_closegaps.html
@@ -1627,7 +1627,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_denovo.html b/doc/html/_modules/promod3/modelling/_denovo.html
index f50cd4b9..b2100964 100644
--- a/doc/html/_modules/promod3/modelling/_denovo.html
+++ b/doc/html/_modules/promod3/modelling/_denovo.html
@@ -200,7 +200,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_fragger_handle.html b/doc/html/_modules/promod3/modelling/_fragger_handle.html
index 531c603f..0ef683b3 100644
--- a/doc/html/_modules/promod3/modelling/_fragger_handle.html
+++ b/doc/html/_modules/promod3/modelling/_fragger_handle.html
@@ -423,7 +423,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_molprobity.html b/doc/html/_modules/promod3/modelling/_molprobity.html
index 5af12776..b9441021 100644
--- a/doc/html/_modules/promod3/modelling/_molprobity.html
+++ b/doc/html/_modules/promod3/modelling/_molprobity.html
@@ -189,7 +189,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_pipeline.html b/doc/html/_modules/promod3/modelling/_pipeline.html
index c1d5adaf..3ea48e01 100644
--- a/doc/html/_modules/promod3/modelling/_pipeline.html
+++ b/doc/html/_modules/promod3/modelling/_pipeline.html
@@ -560,7 +560,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_reconstruct_sidechains.html b/doc/html/_modules/promod3/modelling/_reconstruct_sidechains.html
index d7c7bff4..a8840922 100644
--- a/doc/html/_modules/promod3/modelling/_reconstruct_sidechains.html
+++ b/doc/html/_modules/promod3/modelling/_reconstruct_sidechains.html
@@ -594,7 +594,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/promod3/modelling/_ring_punches.html b/doc/html/_modules/promod3/modelling/_ring_punches.html
index 4b771e84..a4439289 100644
--- a/doc/html/_modules/promod3/modelling/_ring_punches.html
+++ b/doc/html/_modules/promod3/modelling/_ring_punches.html
@@ -308,7 +308,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/_modules/test_actions.html b/doc/html/_modules/test_actions.html
index 3e38acd2..f9739b38 100644
--- a/doc/html/_modules/test_actions.html
+++ b/doc/html/_modules/test_actions.html
@@ -197,7 +197,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/actions/index.html b/doc/html/actions/index.html
index 296203fb..f83632f4 100644
--- a/doc/html/actions/index.html
+++ b/doc/html/actions/index.html
@@ -191,7 +191,7 @@ residue in the aligned sequence. Leading/trailing whitespaces of <CHAINID>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/actions/index_dev.html b/doc/html/actions/index_dev.html
index 6ccb9257..7a72c1a6 100644
--- a/doc/html/actions/index_dev.html
+++ b/doc/html/actions/index_dev.html
@@ -410,7 +410,7 @@ file (also complains if a directory is found instead).</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/buildsystem.html b/doc/html/buildsystem.html
index 35f13e27..05f730f2 100644
--- a/doc/html/buildsystem.html
+++ b/doc/html/buildsystem.html
@@ -204,7 +204,7 @@ safely delete the whole source folder.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/changelog.html b/doc/html/changelog.html
index eb759950..776b517f 100644
--- a/doc/html/changelog.html
+++ b/doc/html/changelog.html
@@ -147,7 +147,7 @@ selected loops, reconstruct hydrogens and minimize energy with MM</li>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/cmake/index.html b/doc/html/cmake/index.html
index 1fc84c2f..f80cc168 100644
--- a/doc/html/cmake/index.html
+++ b/doc/html/cmake/index.html
@@ -372,7 +372,7 @@ target has to be created <strong>before</strong> any action may be attached to i
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/contributing.html b/doc/html/contributing.html
index bac4dc1d..069ec304 100644
--- a/doc/html/contributing.html
+++ b/doc/html/contributing.html
@@ -648,7 +648,7 @@ contributions to web pages using ProMod3.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/geometry.html b/doc/html/core/geometry.html
index 900922c9..3cdcb509 100644
--- a/doc/html/core/geometry.html
+++ b/doc/html/core/geometry.html
@@ -346,7 +346,7 @@ angles and one distance and is used in the fragment database for fast lookups.</
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/graph_minimizer.html b/doc/html/core/graph_minimizer.html
index b77f621e..b99d92a0 100644
--- a/doc/html/core/graph_minimizer.html
+++ b/doc/html/core/graph_minimizer.html
@@ -384,7 +384,7 @@ The second element is the according energy value.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/helper.html b/doc/html/core/helper.html
index b15aa835..2ef049d9 100644
--- a/doc/html/core/helper.html
+++ b/doc/html/core/helper.html
@@ -246,7 +246,7 @@ script will terminate if a gzip file is found.</li>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/index.html b/doc/html/core/index.html
index 5181a7ec..774d53ed 100644
--- a/doc/html/core/index.html
+++ b/doc/html/core/index.html
@@ -104,7 +104,7 @@ modeling per se but cover standard programming issues.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/pm3argparse.html b/doc/html/core/pm3argparse.html
index d62653ff..c92c8960 100644
--- a/doc/html/core/pm3argparse.html
+++ b/doc/html/core/pm3argparse.html
@@ -343,7 +343,7 @@ and with the right constraints.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/runtime_profiling.html b/doc/html/core/runtime_profiling.html
index 9a316a58..2466ad9d 100644
--- a/doc/html/core/runtime_profiling.html
+++ b/doc/html/core/runtime_profiling.html
@@ -200,7 +200,7 @@ will fail miserably if timers are currently running.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/core/setcompoundschemlib.html b/doc/html/core/setcompoundschemlib.html
index f508395a..e0e9cb4d 100644
--- a/doc/html/core/setcompoundschemlib.html
+++ b/doc/html/core/setcompoundschemlib.html
@@ -105,7 +105,7 @@ enabled globally.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/dev_setup.html b/doc/html/dev_setup.html
index e9d4c0d3..f58b1ee6 100644
--- a/doc/html/dev_setup.html
+++ b/doc/html/dev_setup.html
@@ -292,7 +292,7 @@ modules from there, use the binaries from <code class="file docutils literal"><s
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/developers.html b/doc/html/developers.html
index b4788ada..89882a94 100644
--- a/doc/html/developers.html
+++ b/doc/html/developers.html
@@ -123,7 +123,7 @@ new features.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/genindex.html b/doc/html/genindex.html
index 9c340199..4e5da3b4 100644
--- a/doc/html/genindex.html
+++ b/doc/html/genindex.html
@@ -3715,7 +3715,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/gettingstarted.html b/doc/html/gettingstarted.html
index 59d380cc..f984958d 100644
--- a/doc/html/gettingstarted.html
+++ b/doc/html/gettingstarted.html
@@ -147,7 +147,7 @@ not set, 1 thread will be used by default.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/index.html b/doc/html/index.html
index 8366b1a0..9a9a2028 100644
--- a/doc/html/index.html
+++ b/doc/html/index.html
@@ -124,7 +124,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/all_atom.html b/doc/html/loop/all_atom.html
index f55f5ccc..df65f9c5 100644
--- a/doc/html/loop/all_atom.html
+++ b/doc/html/loop/all_atom.html
@@ -1342,7 +1342,7 @@ when residue is N terminal.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/backbone.html b/doc/html/loop/backbone.html
index 66ce38d5..096e988e 100644
--- a/doc/html/loop/backbone.html
+++ b/doc/html/loop/backbone.html
@@ -1003,7 +1003,7 @@ backbone list.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/index.html b/doc/html/loop/index.html
index a5305baf..4ceff047 100644
--- a/doc/html/loop/index.html
+++ b/doc/html/loop/index.html
@@ -162,7 +162,7 @@ loops. The following example should give you an idea of what can be done:</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/load_loop_objects.html b/doc/html/loop/load_loop_objects.html
index f4448c84..8425953c 100644
--- a/doc/html/loop/load_loop_objects.html
+++ b/doc/html/loop/load_loop_objects.html
@@ -210,7 +210,7 @@ Proteins, 62(4):892–908, Mar 2006.</dd>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/mm_system_creation.html b/doc/html/loop/mm_system_creation.html
index 7a13b5a8..38cdf31e 100644
--- a/doc/html/loop/mm_system_creation.html
+++ b/doc/html/loop/mm_system_creation.html
@@ -1592,7 +1592,7 @@ False, False)</em>.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/structure_db.html b/doc/html/loop/structure_db.html
index c565062c..9e2c5705 100644
--- a/doc/html/loop/structure_db.html
+++ b/doc/html/loop/structure_db.html
@@ -1779,7 +1779,7 @@ to <strong>to</strong>, not including <strong>to</strong> itself</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/loop/torsion_sampler.html b/doc/html/loop/torsion_sampler.html
index a345480f..c9d75287 100644
--- a/doc/html/loop/torsion_sampler.html
+++ b/doc/html/loop/torsion_sampler.html
@@ -589,7 +589,7 @@ standard amino acid</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/algorithms.html b/doc/html/modelling/algorithms.html
index b1460016..0cd8be87 100644
--- a/doc/html/modelling/algorithms.html
+++ b/doc/html/modelling/algorithms.html
@@ -411,7 +411,7 @@ with the keys of the scores in <strong>scorer</strong></li>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/gap_handling.html b/doc/html/modelling/gap_handling.html
index 8e83430f..032f3350 100644
--- a/doc/html/modelling/gap_handling.html
+++ b/doc/html/modelling/gap_handling.html
@@ -652,7 +652,7 @@ gaps of different chains or an N-terminal gap with a C-terminal gap.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/index.html b/doc/html/modelling/index.html
index f174544b..79fbb0d1 100644
--- a/doc/html/modelling/index.html
+++ b/doc/html/modelling/index.html
@@ -157,7 +157,7 @@ a model fully automatically as follows:</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/loop_candidates.html b/doc/html/modelling/loop_candidates.html
index d150dfe3..b1803ae6 100644
--- a/doc/html/modelling/loop_candidates.html
+++ b/doc/html/modelling/loop_candidates.html
@@ -1139,7 +1139,7 @@ scoring routines, <a class="reference internal" href="#promod3.modelling.ScoreCo
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/loop_closing.html b/doc/html/modelling/loop_closing.html
index 855a9c19..d6e58275 100644
--- a/doc/html/modelling/loop_closing.html
+++ b/doc/html/modelling/loop_closing.html
@@ -655,7 +655,7 @@ the one given in the constructor.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/model_checking.html b/doc/html/modelling/model_checking.html
index 09e289a7..914620c0 100644
--- a/doc/html/modelling/model_checking.html
+++ b/doc/html/modelling/model_checking.html
@@ -282,7 +282,7 @@ executable is not found.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/monte_carlo.html b/doc/html/modelling/monte_carlo.html
index 699ce4a0..6732e2a0 100644
--- a/doc/html/modelling/monte_carlo.html
+++ b/doc/html/modelling/monte_carlo.html
@@ -735,7 +735,7 @@ the returned temperature gets multiplied by the <em>cooling_factor</em>.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/pipeline.html b/doc/html/modelling/pipeline.html
index b6f656ec..9973f610 100644
--- a/doc/html/modelling/pipeline.html
+++ b/doc/html/modelling/pipeline.html
@@ -1240,7 +1240,7 @@ CHARMM one (see <a class="reference internal" href="#promod3.modelling.BuildFrom
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/modelling/sidechain_reconstruction.html b/doc/html/modelling/sidechain_reconstruction.html
index 9bd233f6..85e5fae7 100644
--- a/doc/html/modelling/sidechain_reconstruction.html
+++ b/doc/html/modelling/sidechain_reconstruction.html
@@ -439,7 +439,7 @@ in the environment (same length as <em>env_pos.res_indices</em>)</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/portableIO.html b/doc/html/portableIO.html
index b9120417..ce9c3bed 100644
--- a/doc/html/portableIO.html
+++ b/doc/html/portableIO.html
@@ -477,7 +477,7 @@ in the <code class="file docutils literal"><span class="pre">extras/data_generat
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/py-modindex.html b/doc/html/py-modindex.html
index 0cffbd52..94cc9340 100644
--- a/doc/html/py-modindex.html
+++ b/doc/html/py-modindex.html
@@ -131,7 +131,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/scoring/all_atom_scorers.html b/doc/html/scoring/all_atom_scorers.html
index 13c1d1c2..983fd1a4 100644
--- a/doc/html/scoring/all_atom_scorers.html
+++ b/doc/html/scoring/all_atom_scorers.html
@@ -671,7 +671,7 @@ of residues in the input loop. True by default.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/scoring/backbone_score_env.html b/doc/html/scoring/backbone_score_env.html
index ba266b5c..e1b57c32 100644
--- a/doc/html/scoring/backbone_score_env.html
+++ b/doc/html/scoring/backbone_score_env.html
@@ -510,7 +510,7 @@ inconsistent with SEQRES you initialized the DiscoContainer with</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/scoring/backbone_scorers.html b/doc/html/scoring/backbone_scorers.html
index 4506d8b1..71276424 100644
--- a/doc/html/scoring/backbone_scorers.html
+++ b/doc/html/scoring/backbone_scorers.html
@@ -1387,7 +1387,7 @@ of residues to be scored. True by default.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/scoring/index.html b/doc/html/scoring/index.html
index a4932116..e7336030 100644
--- a/doc/html/scoring/index.html
+++ b/doc/html/scoring/index.html
@@ -147,7 +147,7 @@ scorers to it and finally score some loops:</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/scoring/other_scoring_functions.html b/doc/html/scoring/other_scoring_functions.html
index 84fd8c9e..998c0c6c 100644
--- a/doc/html/scoring/other_scoring_functions.html
+++ b/doc/html/scoring/other_scoring_functions.html
@@ -164,7 +164,7 @@ construction algorithm <a class="reference internal" href="#canutescu2003b" id="
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/search.html b/doc/html/search.html
index 1c793321..175b5dbe 100644
--- a/doc/html/search.html
+++ b/doc/html/search.html
@@ -86,7 +86,7 @@
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/disulfid.html b/doc/html/sidechain/disulfid.html
index 469a1633..3724f552 100644
--- a/doc/html/sidechain/disulfid.html
+++ b/doc/html/sidechain/disulfid.html
@@ -179,7 +179,7 @@ describe the optimal rotamers in the according rotamer groups.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/frame.html b/doc/html/sidechain/frame.html
index f85ddf0c..9230a415 100644
--- a/doc/html/sidechain/frame.html
+++ b/doc/html/sidechain/frame.html
@@ -168,7 +168,7 @@ can be passed to rotamer groups for calculating frame energies.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/graph.html b/doc/html/sidechain/graph.html
index c63fdc04..e547f6f7 100644
--- a/doc/html/sidechain/graph.html
+++ b/doc/html/sidechain/graph.html
@@ -119,7 +119,7 @@ conformations for every amino acid position.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/index.html b/doc/html/sidechain/index.html
index 3a2889f6..3af49da0 100644
--- a/doc/html/sidechain/index.html
+++ b/doc/html/sidechain/index.html
@@ -215,7 +215,7 @@ pipelines available in the modelling module.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/loading.html b/doc/html/sidechain/loading.html
index dd251765..cca07187 100644
--- a/doc/html/sidechain/loading.html
+++ b/doc/html/sidechain/loading.html
@@ -167,7 +167,7 @@ incomplete if the last problem gets triggered.</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/rotamer.html b/doc/html/sidechain/rotamer.html
index 10e77511..582ce7f7 100644
--- a/doc/html/sidechain/rotamer.html
+++ b/doc/html/sidechain/rotamer.html
@@ -1224,7 +1224,7 @@ rotamers with <em>self_energy</em> > <em>l_e</em> + <em>thresh</em></p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/rotamer_constructor.html b/doc/html/sidechain/rotamer_constructor.html
index 244c467a..0a026c73 100644
--- a/doc/html/sidechain/rotamer_constructor.html
+++ b/doc/html/sidechain/rotamer_constructor.html
@@ -368,7 +368,7 @@ to be assigned</td>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/rotamer_id.html b/doc/html/sidechain/rotamer_id.html
index a18495fc..e324b292 100644
--- a/doc/html/sidechain/rotamer_id.html
+++ b/doc/html/sidechain/rotamer_id.html
@@ -183,7 +183,7 @@ defined in <a class="reference external" href="https://www.openstructure.org/doc
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/rotamer_lib.html b/doc/html/sidechain/rotamer_lib.html
index 02882552..7bfcf345 100644
--- a/doc/html/sidechain/rotamer_lib.html
+++ b/doc/html/sidechain/rotamer_lib.html
@@ -649,7 +649,7 @@ considered similar</li>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/sidechain/subrotamer_optimizer.html b/doc/html/sidechain/subrotamer_optimizer.html
index 31b532f3..56971478 100644
--- a/doc/html/sidechain/subrotamer_optimizer.html
+++ b/doc/html/sidechain/subrotamer_optimizer.html
@@ -125,7 +125,7 @@ internal <a class="reference internal" href="graph.html#promod3.sidechain.Rotame
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
diff --git a/doc/html/users.html b/doc/html/users.html
index 3b92dda7..cbda6deb 100644
--- a/doc/html/users.html
+++ b/doc/html/users.html
@@ -151,7 +151,7 @@ scripts using the functionality of this library.</p>
<div class="clearer"></div>
</div>
<div class="footer">
- ©2017, ProMod3 authors.
+ ©2018, ProMod3 authors.
|
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.4.1</a>
--
GitLab