diff --git a/extras/code_generation/amino_acid_atoms.py b/extras/code_generation/amino_acid_atoms.py index 5907e7e1f659daf5a8e650985c1203f81b361813..114c21076ce2e4f1ef3627e8dd619b317f0d0ed8 100644 --- a/extras/code_generation/amino_acid_atoms.py +++ b/extras/code_generation/amino_acid_atoms.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/code_generation/amino_acid_atoms_hydrogens.py b/extras/code_generation/amino_acid_atoms_hydrogens.py index 8b4375e86b95280d6e0908cde1af30f67a03c8c0..63f326fcf40382cebd8560695508dadc994a08c7 100644 --- a/extras/code_generation/amino_acid_atoms_hydrogens.py +++ b/extras/code_generation/amino_acid_atoms_hydrogens.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/code_generation/backbone_score_unittest.py b/extras/code_generation/backbone_score_unittest.py index f255bd2e3130db87899a4fb840d7a08a915c0240..4cd4acb015cdcb2c46fedc2482298efa23f6f005 100644 --- a/extras/code_generation/backbone_score_unittest.py +++ b/extras/code_generation/backbone_score_unittest.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/code_generation/hydrogen_rules.py b/extras/code_generation/hydrogen_rules.py index a5d954773b40292ed95ac842e4ef861dd08b49e5..c68a675f7011b05c4d2619ecb11a540d4a59b259 100644 --- a/extras/code_generation/hydrogen_rules.py +++ b/extras/code_generation/hydrogen_rules.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/code_generation/ideal_bb_param.py b/extras/code_generation/ideal_bb_param.py index 86edc2f3d7075ef4f6e763b1d9a05ef56b0ce98e..8a20f2e2e419f438d60a963adb5e44c7c3d8fd13 100644 --- a/extras/code_generation/ideal_bb_param.py +++ b/extras/code_generation/ideal_bb_param.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/code_generation/sidechain_atom_rule_lookup.py b/extras/code_generation/sidechain_atom_rule_lookup.py index 56e77653e8b7d3232443336ea0a4359712858a08..249188e68b7de2424d600f47484ba30bab727d13 100644 --- a/extras/code_generation/sidechain_atom_rule_lookup.py +++ b/extras/code_generation/sidechain_atom_rule_lookup.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py b/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py index 33f0f8491b19b024204afd7969579717560fee80..a13b848e98b3de9232744c390fd134df3342abf2 100644 --- a/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py +++ b/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/backbone_scorer/create_default_scorer.py b/extras/data_generation/backbone_scorer/create_default_scorer.py index 585e00c93837fd21e9d9e8b9a82c8bfdd13c6db9..c631664e38d33bb8f63615bde1d5325a1297ccf6 100644 --- a/extras/data_generation/backbone_scorer/create_default_scorer.py +++ b/extras/data_generation/backbone_scorer/create_default_scorer.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/force_field/create_charmm_force_field.py b/extras/data_generation/force_field/create_charmm_force_field.py index 5c10bb5814da63dcb7058d0cc41776010273137c..70950de39259b546e0feed17852a70dffa63fb14 100644 --- a/extras/data_generation/force_field/create_charmm_force_field.py +++ b/extras/data_generation/force_field/create_charmm_force_field.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/frag_db/build_frag_db.py b/extras/data_generation/frag_db/build_frag_db.py index d1db4a59eb907ef1b32dc215e681bc065ae68dce..3500d7070f0844adad85e827d5b4f562b1e75404 100644 --- a/extras/data_generation/frag_db/build_frag_db.py +++ b/extras/data_generation/frag_db/build_frag_db.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/portable_binaries/convert_data.cc b/extras/data_generation/portable_binaries/convert_data.cc index 4b0e3483003b8e1187078457955f83e28e2e1795..64f5719ab6d36ff9e306437fb4e26eeb080dd827 100644 --- a/extras/data_generation/portable_binaries/convert_data.cc +++ b/extras/data_generation/portable_binaries/convert_data.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py b/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py index 7b2a53ada798b63e6f42c8cef8e67183794320b7..99850ace5d93ffb0bba67b6955b0d719576e2bf2 100644 --- a/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py +++ b/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/rotamer_library/README b/extras/data_generation/rotamer_library/README index ca7555918fa1dd1dc9776eb25443514bc58553e3..a2c2312237f7aeb10cb3fff1a83a3da270284c30 100644 --- a/extras/data_generation/rotamer_library/README +++ b/extras/data_generation/rotamer_library/README @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/rotamer_library/do_bbdep_lib.py b/extras/data_generation/rotamer_library/do_bbdep_lib.py index 3b9b1441255553ea58770064022124f84688f4b2..cb849e072e428c0e9db6305f31978cbb66999618 100644 --- a/extras/data_generation/rotamer_library/do_bbdep_lib.py +++ b/extras/data_generation/rotamer_library/do_bbdep_lib.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/rotamer_library/do_lib.py b/extras/data_generation/rotamer_library/do_lib.py index 88385283ea129ea5afe89b89b09451b12349ea06..f4efeb709ae6e9072ec27b3f7458c3c8dcc1804f 100644 --- a/extras/data_generation/rotamer_library/do_lib.py +++ b/extras/data_generation/rotamer_library/do_lib.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/rotamer_library/fetch_data.py b/extras/data_generation/rotamer_library/fetch_data.py index 5186ba088e8f761efd09fee8dc4f4d6a3f58b21a..44e1e50c6ec59036897fabaa1717cba20d68c7e4 100644 --- a/extras/data_generation/rotamer_library/fetch_data.py +++ b/extras/data_generation/rotamer_library/fetch_data.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/README b/extras/data_generation/structure_db/README index 2286f335b4c01c5f7b6350327db905617bc151d7..7ca28a56966ed0fdbf0bd94a14099b3932cc1311 100644 --- a/extras/data_generation/structure_db/README +++ b/extras/data_generation/structure_db/README @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/assign_structure_profiles.py b/extras/data_generation/structure_db/assign_structure_profiles.py index 71d892cf972497c2c512f231222ef0abcb623549..2486f7122158769741f55ac4f6357e86cfae213b 100644 --- a/extras/data_generation/structure_db/assign_structure_profiles.py +++ b/extras/data_generation/structure_db/assign_structure_profiles.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/build_structure_db.py b/extras/data_generation/structure_db/build_structure_db.py index 43a252872fb5ca4b7aea004def98459bdc58a21f..bb273126aaab2e5e1f6f8c5be389a0f799f06087 100644 --- a/extras/data_generation/structure_db/build_structure_db.py +++ b/extras/data_generation/structure_db/build_structure_db.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/create_structure_profiles.py b/extras/data_generation/structure_db/create_structure_profiles.py index d4a558bd8851419d386be73053dd7fb45ab03632..e81973ae2d5d15a4fd2d46738f952133d0ab7ee0 100644 --- a/extras/data_generation/structure_db/create_structure_profiles.py +++ b/extras/data_generation/structure_db/create_structure_profiles.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/get_data_from_smtl.py b/extras/data_generation/structure_db/get_data_from_smtl.py index 986c10a7ab8cded12258c6a35d5150cd1682326e..59140bbdc6e599492166a8256afc0c7961dd72c9 100644 --- a/extras/data_generation/structure_db/get_data_from_smtl.py +++ b/extras/data_generation/structure_db/get_data_from_smtl.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py b/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py index d0e195c9555dbcea76b74d0e1fbcb4a4ec0bea86..83fce13081d1fa425f31c6b59a72b2225f441554 100644 --- a/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py +++ b/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/data_generation/torsion_sampler/train_torsion_sampler.py b/extras/data_generation/torsion_sampler/train_torsion_sampler.py index 9c0ea6fc1609bc135817054f7951448cec83614a..eae2cb391ffee84310f67968b34727b7bc89a420 100644 --- a/extras/data_generation/torsion_sampler/train_torsion_sampler.py +++ b/extras/data_generation/torsion_sampler/train_torsion_sampler.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/__init__.py b/extras/pre_commit/pm3_csc/__init__.py index d526e2ccc561f65cb13374753646fb3b92a63d0e..75a076935fbd95f33c335a446ac922185d6bb31f 100644 --- a/extras/pre_commit/pm3_csc/__init__.py +++ b/extras/pre_commit/pm3_csc/__init__.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/base.py b/extras/pre_commit/pm3_csc/base.py index d2fbf65b13834574e2ce06fc68847eff41de89d3..cb1543a15da772ea3b8cb442b05b03be665d67f7 100644 --- a/extras/pre_commit/pm3_csc/base.py +++ b/extras/pre_commit/pm3_csc/base.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/__init__.py b/extras/pre_commit/pm3_csc/filecheck/__init__.py index 1d614bb5528fbe5dd31812b610874762f48b3943..17cb6fc2f7fea593a0eeafaf08d2ff1cc4f7f566 100644 --- a/extras/pre_commit/pm3_csc/filecheck/__init__.py +++ b/extras/pre_commit/pm3_csc/filecheck/__init__.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/base.py b/extras/pre_commit/pm3_csc/filecheck/base.py index 95ab2274f992a4e2b9322eb87db537431dbd55a1..a70fd759fdf790903bb8b24e9bbe4c0a44321af0 100644 --- a/extras/pre_commit/pm3_csc/filecheck/base.py +++ b/extras/pre_commit/pm3_csc/filecheck/base.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/ccode.py b/extras/pre_commit/pm3_csc/filecheck/ccode.py index e5bfe8be8a20cbd45e975be1fdf79e43eb9225ed..63c64c1d7a4a47e1f6d2ba6b0bd055158ee25bef 100644 --- a/extras/pre_commit/pm3_csc/filecheck/ccode.py +++ b/extras/pre_commit/pm3_csc/filecheck/ccode.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/cmake.py b/extras/pre_commit/pm3_csc/filecheck/cmake.py index fde92de2138f904f40e9ce3d5a333942ebdae0de..fe78dbf7ec12fed8459cd780d539791358f424ec 100644 --- a/extras/pre_commit/pm3_csc/filecheck/cmake.py +++ b/extras/pre_commit/pm3_csc/filecheck/cmake.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/python.py b/extras/pre_commit/pm3_csc/filecheck/python.py index a932330e95eb3cb9c9ea5797b565c309f5913dcb..d540c153d24ba050a26b00ff64d2e156202176ba 100644 --- a/extras/pre_commit/pm3_csc/filecheck/python.py +++ b/extras/pre_commit/pm3_csc/filecheck/python.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/rest.py b/extras/pre_commit/pm3_csc/filecheck/rest.py index a3e5a4c62e0e6101da5cb7f47d3d8dfb3f47e0a2..2491143769bb00d0609ec066ed9ab31c00580a9e 100644 --- a/extras/pre_commit/pm3_csc/filecheck/rest.py +++ b/extras/pre_commit/pm3_csc/filecheck/rest.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/shellscript.py b/extras/pre_commit/pm3_csc/filecheck/shellscript.py index 73a958957c95817d0d0f7c98a97c7b3a3c1f2f95..744d75f8ce662fc0129abce8964f594da0398be1 100644 --- a/extras/pre_commit/pm3_csc/filecheck/shellscript.py +++ b/extras/pre_commit/pm3_csc/filecheck/shellscript.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/filecheck/text.py b/extras/pre_commit/pm3_csc/filecheck/text.py index d4b59f3721589d10b424f232e7897e24bff9aae3..32283a1c5a03f4c3bc7bb497d03ff1195dfbecee 100644 --- a/extras/pre_commit/pm3_csc/filecheck/text.py +++ b/extras/pre_commit/pm3_csc/filecheck/text.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pm3_csc/git.py b/extras/pre_commit/pm3_csc/git.py index ed9011ca7adce39c45f74e9055737a24ce10e560..f061b82c79c27a3f525ba37035b9f69e84015e08 100644 --- a/extras/pre_commit/pm3_csc/git.py +++ b/extras/pre_commit/pm3_csc/git.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/pre_commit/pre-commit b/extras/pre_commit/pre-commit index df8eb506803ee6c928d7451a5e359cd30fe95925..7105e0b123ec18043f584b2b2f4cd31de4fe3173 100644 --- a/extras/pre_commit/pre-commit +++ b/extras/pre_commit/pre-commit @@ -1,7 +1,7 @@ #!/usr/bin/env python # pylint: disable=invalid-name -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/Makefile b/extras/sanity_checks/Makefile index 79d2b5862144b7926d6ba11628ad060085e67d85..ed240c0f419d873c60a175ccc2f486b3ac82d51b 100644 --- a/extras/sanity_checks/Makefile +++ b/extras/sanity_checks/Makefile @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/README b/extras/sanity_checks/README index 81bbd702a922c5ba1504ec3ab355ca54b25265e4..533ed611c9a8d00ebdf0bd70f60428346f41ed74 100644 --- a/extras/sanity_checks/README +++ b/extras/sanity_checks/README @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/run_pipeline.py b/extras/sanity_checks/run_pipeline.py index 4a39ea5c64384662c532d0964c3a79bee5bdb988..3ae16ea921491d90030aade8a68e1639e46b3c18 100644 --- a/extras/sanity_checks/run_pipeline.py +++ b/extras/sanity_checks/run_pipeline.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/test_all.py b/extras/sanity_checks/test_all.py index 0de61ad7f2ca5187539073cf570842eab5f624ba..b3544580833253ffff370a32bde27e43e1d1ffd6 100644 --- a/extras/sanity_checks/test_all.py +++ b/extras/sanity_checks/test_all.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/test_cpp.cc b/extras/sanity_checks/test_cpp.cc index 9c8e3365517e69d0dcf73637e9308cf2b4b8a6fe..f43ae813c4d5203615520c62b2710f367e21dcf1 100644 --- a/extras/sanity_checks/test_cpp.cc +++ b/extras/sanity_checks/test_cpp.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/sanity_checks/test_module.py b/extras/sanity_checks/test_module.py index 7c0f351460ae86b9e6d6ea2c7208b01e587b690a..72993fc67e63fcd1a2db64d729016a1ef06744cd 100644 --- a/extras/sanity_checks/test_module.py +++ b/extras/sanity_checks/test_module.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/README b/extras/scoring_weight_training/README index 3c6db6b77663e2fe55690fe2586d0d444eb758a6..93d912e8b0c58380d7b2346e4194e33a1b9d3320 100644 --- a/extras/scoring_weight_training/README +++ b/extras/scoring_weight_training/README @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/analyze_bft_candidates.py b/extras/scoring_weight_training/analyze_bft_candidates.py index 1cbc4dbb0d952d1184d568d45e697879269785ea..54a9ec1d79877753f5dc137a3814f464183f343a 100644 --- a/extras/scoring_weight_training/analyze_bft_candidates.py +++ b/extras/scoring_weight_training/analyze_bft_candidates.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/analyze_bft_score_correlations.py b/extras/scoring_weight_training/analyze_bft_score_correlations.py index b5956fa8a906243bbb475de3b1db5a868f966b19..d7b865c7dc8f6e044f0568aaac7326cee32e669c 100644 --- a/extras/scoring_weight_training/analyze_bft_score_correlations.py +++ b/extras/scoring_weight_training/analyze_bft_score_correlations.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/analyze_bft_scores.py b/extras/scoring_weight_training/analyze_bft_scores.py index 98276d0cf4c0604c8f00c160e41e7f0fb419c95a..aef180e780b5d847c4fd6736b30c0d101cf4034d 100644 --- a/extras/scoring_weight_training/analyze_bft_scores.py +++ b/extras/scoring_weight_training/analyze_bft_scores.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/analyze_weights.py b/extras/scoring_weight_training/analyze_weights.py index da4f9675ba5a91fa4b46ca674658c227e4aa78a0..e94a36a45be6cd5a848afe721dd5d05b8e4811ff 100644 --- a/extras/scoring_weight_training/analyze_weights.py +++ b/extras/scoring_weight_training/analyze_weights.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/collect_optimized_weights.py b/extras/scoring_weight_training/collect_optimized_weights.py index c3d52b917369192bf45430be2a9c33c81a69080e..e7ca3a274c7cd6cbcbd56475fe8026ce9c467b62 100644 --- a/extras/scoring_weight_training/collect_optimized_weights.py +++ b/extras/scoring_weight_training/collect_optimized_weights.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/common.py b/extras/scoring_weight_training/common.py index f0bcf55b2a0c8e0a167907ee7528693962fdf91f..dc197819adbecc3c6c8792db1037902db439eaff 100644 --- a/extras/scoring_weight_training/common.py +++ b/extras/scoring_weight_training/common.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/generate_bft.py b/extras/scoring_weight_training/generate_bft.py index 70b80750d0edb3be1f59690ffc6f032d095f1b53..1f16b72c476e8d63a334535b55602f9b587f651f 100644 --- a/extras/scoring_weight_training/generate_bft.py +++ b/extras/scoring_weight_training/generate_bft.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/generate_bft_chunks.py b/extras/scoring_weight_training/generate_bft_chunks.py index 4587bda835806a64b93096ad8df10d037ff48fc4..60ca8619053f4921e85d1d8e8678937e83bdbe52 100644 --- a/extras/scoring_weight_training/generate_bft_chunks.py +++ b/extras/scoring_weight_training/generate_bft_chunks.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/generate_bft_dbs.py b/extras/scoring_weight_training/generate_bft_dbs.py index 1eaa2105e2a9d578be56461710638187d0f8a69f..dab8cf72f23ead1ed7f14bb05dbbd76711452fac 100644 --- a/extras/scoring_weight_training/generate_bft_dbs.py +++ b/extras/scoring_weight_training/generate_bft_dbs.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/generate_bft_testset.py b/extras/scoring_weight_training/generate_bft_testset.py index 0f03a89a00ce5324d69a34d466f5c192a611b6c5..4033eec66b87c5a9597fbc2b2695ed6c94879d3c 100644 --- a/extras/scoring_weight_training/generate_bft_testset.py +++ b/extras/scoring_weight_training/generate_bft_testset.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/generate_training_bft.py b/extras/scoring_weight_training/generate_training_bft.py index da3c499b92b3ce76f8c26e9973c5302e8ec8030c..f6cedab01823a53eac23ee699c9219aea5288b98 100644 --- a/extras/scoring_weight_training/generate_training_bft.py +++ b/extras/scoring_weight_training/generate_training_bft.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/get_weights_code.py b/extras/scoring_weight_training/get_weights_code.py index b48b2067ad0a4df7e877778b4a1921205360e2c4..2367d6a1984f4761081617c3696950ca5178cff4 100644 --- a/extras/scoring_weight_training/get_weights_code.py +++ b/extras/scoring_weight_training/get_weights_code.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/optimize_weights.py b/extras/scoring_weight_training/optimize_weights.py index 257f9291c7dc8132a3bca8672354a104c4921d96..27a65164e031c7000828a6bda5fbe5a2b53881fc 100644 --- a/extras/scoring_weight_training/optimize_weights.py +++ b/extras/scoring_weight_training/optimize_weights.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/optimize_weights_cma.py b/extras/scoring_weight_training/optimize_weights_cma.py index 590a6202e9e5cb5e3f293addccfb2417133f2572..11b313757c304a5155053eb0f33b755e68fff39a 100644 --- a/extras/scoring_weight_training/optimize_weights_cma.py +++ b/extras/scoring_weight_training/optimize_weights_cma.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/scoring_weight_training/run_all_optimizations.py b/extras/scoring_weight_training/run_all_optimizations.py index 9753c0ace064d03bd5bb8b330bc7de62bd1e6e5f..de7157b3579d6ccb446b1846170781ce33e949b6 100644 --- a/extras/scoring_weight_training/run_all_optimizations.py +++ b/extras/scoring_weight_training/run_all_optimizations.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/extras/test_code/test.cc b/extras/test_code/test.cc index 7920788f06cdfa792e9a8ece3ac9d212a3c26083..df5077b85202092053d761eac920d826a924283c 100644 --- a/extras/test_code/test.cc +++ b/extras/test_code/test.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License");