From 93ebf514425f5c8417bf7ec601447c4c88a476f8 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Wed, 12 Feb 2020 16:41:48 +0100
Subject: [PATCH] Bump extras to (c) 2020

---
 extras/code_generation/amino_acid_atoms.py                      | 2 +-
 extras/code_generation/amino_acid_atoms_hydrogens.py            | 2 +-
 extras/code_generation/backbone_score_unittest.py               | 2 +-
 extras/code_generation/hydrogen_rules.py                        | 2 +-
 extras/code_generation/ideal_bb_param.py                        | 2 +-
 extras/code_generation/sidechain_atom_rule_lookup.py            | 2 +-
 .../data_generation/all_atom_scorer/create_default_aa_scorer.py | 2 +-
 extras/data_generation/backbone_scorer/create_default_scorer.py | 2 +-
 extras/data_generation/force_field/create_charmm_force_field.py | 2 +-
 extras/data_generation/frag_db/build_frag_db.py                 | 2 +-
 extras/data_generation/portable_binaries/convert_data.cc        | 2 +-
 extras/data_generation/rotamer_library/CreateDunbrackLibrary.py | 2 +-
 extras/data_generation/rotamer_library/README                   | 2 +-
 extras/data_generation/rotamer_library/do_bbdep_lib.py          | 2 +-
 extras/data_generation/rotamer_library/do_lib.py                | 2 +-
 extras/data_generation/rotamer_library/fetch_data.py            | 2 +-
 extras/data_generation/structure_db/README                      | 2 +-
 .../data_generation/structure_db/assign_structure_profiles.py   | 2 +-
 extras/data_generation/structure_db/build_structure_db.py       | 2 +-
 .../data_generation/structure_db/create_structure_profiles.py   | 2 +-
 extras/data_generation/structure_db/get_data_from_smtl.py       | 2 +-
 .../structure_db/prepare_slurm_submission_structure_profiles.py | 2 +-
 extras/data_generation/torsion_sampler/train_torsion_sampler.py | 2 +-
 extras/pre_commit/pm3_csc/__init__.py                           | 2 +-
 extras/pre_commit/pm3_csc/base.py                               | 2 +-
 extras/pre_commit/pm3_csc/filecheck/__init__.py                 | 2 +-
 extras/pre_commit/pm3_csc/filecheck/base.py                     | 2 +-
 extras/pre_commit/pm3_csc/filecheck/ccode.py                    | 2 +-
 extras/pre_commit/pm3_csc/filecheck/cmake.py                    | 2 +-
 extras/pre_commit/pm3_csc/filecheck/python.py                   | 2 +-
 extras/pre_commit/pm3_csc/filecheck/rest.py                     | 2 +-
 extras/pre_commit/pm3_csc/filecheck/shellscript.py              | 2 +-
 extras/pre_commit/pm3_csc/filecheck/text.py                     | 2 +-
 extras/pre_commit/pm3_csc/git.py                                | 2 +-
 extras/pre_commit/pre-commit                                    | 2 +-
 extras/sanity_checks/Makefile                                   | 2 +-
 extras/sanity_checks/README                                     | 2 +-
 extras/sanity_checks/run_pipeline.py                            | 2 +-
 extras/sanity_checks/test_all.py                                | 2 +-
 extras/sanity_checks/test_cpp.cc                                | 2 +-
 extras/sanity_checks/test_module.py                             | 2 +-
 extras/scoring_weight_training/README                           | 2 +-
 extras/scoring_weight_training/analyze_bft_candidates.py        | 2 +-
 .../scoring_weight_training/analyze_bft_score_correlations.py   | 2 +-
 extras/scoring_weight_training/analyze_bft_scores.py            | 2 +-
 extras/scoring_weight_training/analyze_weights.py               | 2 +-
 extras/scoring_weight_training/collect_optimized_weights.py     | 2 +-
 extras/scoring_weight_training/common.py                        | 2 +-
 extras/scoring_weight_training/generate_bft.py                  | 2 +-
 extras/scoring_weight_training/generate_bft_chunks.py           | 2 +-
 extras/scoring_weight_training/generate_bft_dbs.py              | 2 +-
 extras/scoring_weight_training/generate_bft_testset.py          | 2 +-
 extras/scoring_weight_training/generate_training_bft.py         | 2 +-
 extras/scoring_weight_training/get_weights_code.py              | 2 +-
 extras/scoring_weight_training/optimize_weights.py              | 2 +-
 extras/scoring_weight_training/optimize_weights_cma.py          | 2 +-
 extras/scoring_weight_training/run_all_optimizations.py         | 2 +-
 extras/test_code/test.cc                                        | 2 +-
 58 files changed, 58 insertions(+), 58 deletions(-)

diff --git a/extras/code_generation/amino_acid_atoms.py b/extras/code_generation/amino_acid_atoms.py
index 5907e7e1..114c2107 100644
--- a/extras/code_generation/amino_acid_atoms.py
+++ b/extras/code_generation/amino_acid_atoms.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/code_generation/amino_acid_atoms_hydrogens.py b/extras/code_generation/amino_acid_atoms_hydrogens.py
index 8b4375e8..63f326fc 100644
--- a/extras/code_generation/amino_acid_atoms_hydrogens.py
+++ b/extras/code_generation/amino_acid_atoms_hydrogens.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/code_generation/backbone_score_unittest.py b/extras/code_generation/backbone_score_unittest.py
index f255bd2e..4cd4acb0 100644
--- a/extras/code_generation/backbone_score_unittest.py
+++ b/extras/code_generation/backbone_score_unittest.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/code_generation/hydrogen_rules.py b/extras/code_generation/hydrogen_rules.py
index a5d95477..c68a675f 100644
--- a/extras/code_generation/hydrogen_rules.py
+++ b/extras/code_generation/hydrogen_rules.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/code_generation/ideal_bb_param.py b/extras/code_generation/ideal_bb_param.py
index 86edc2f3..8a20f2e2 100644
--- a/extras/code_generation/ideal_bb_param.py
+++ b/extras/code_generation/ideal_bb_param.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/code_generation/sidechain_atom_rule_lookup.py b/extras/code_generation/sidechain_atom_rule_lookup.py
index 56e77653..249188e6 100644
--- a/extras/code_generation/sidechain_atom_rule_lookup.py
+++ b/extras/code_generation/sidechain_atom_rule_lookup.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py b/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py
index 33f0f849..a13b848e 100644
--- a/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py
+++ b/extras/data_generation/all_atom_scorer/create_default_aa_scorer.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/backbone_scorer/create_default_scorer.py b/extras/data_generation/backbone_scorer/create_default_scorer.py
index 585e00c9..c631664e 100644
--- a/extras/data_generation/backbone_scorer/create_default_scorer.py
+++ b/extras/data_generation/backbone_scorer/create_default_scorer.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/force_field/create_charmm_force_field.py b/extras/data_generation/force_field/create_charmm_force_field.py
index 5c10bb58..70950de3 100644
--- a/extras/data_generation/force_field/create_charmm_force_field.py
+++ b/extras/data_generation/force_field/create_charmm_force_field.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/frag_db/build_frag_db.py b/extras/data_generation/frag_db/build_frag_db.py
index d1db4a59..3500d707 100644
--- a/extras/data_generation/frag_db/build_frag_db.py
+++ b/extras/data_generation/frag_db/build_frag_db.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/portable_binaries/convert_data.cc b/extras/data_generation/portable_binaries/convert_data.cc
index 4b0e3483..64f5719a 100644
--- a/extras/data_generation/portable_binaries/convert_data.cc
+++ b/extras/data_generation/portable_binaries/convert_data.cc
@@ -1,4 +1,4 @@
-// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 //                          Biozentrum - University of Basel
 // 
 // Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py b/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py
index 7b2a53ad..99850ace 100644
--- a/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py
+++ b/extras/data_generation/rotamer_library/CreateDunbrackLibrary.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/rotamer_library/README b/extras/data_generation/rotamer_library/README
index ca755591..a2c23122 100644
--- a/extras/data_generation/rotamer_library/README
+++ b/extras/data_generation/rotamer_library/README
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/rotamer_library/do_bbdep_lib.py b/extras/data_generation/rotamer_library/do_bbdep_lib.py
index 3b9b1441..cb849e07 100644
--- a/extras/data_generation/rotamer_library/do_bbdep_lib.py
+++ b/extras/data_generation/rotamer_library/do_bbdep_lib.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/rotamer_library/do_lib.py b/extras/data_generation/rotamer_library/do_lib.py
index 88385283..f4efeb70 100644
--- a/extras/data_generation/rotamer_library/do_lib.py
+++ b/extras/data_generation/rotamer_library/do_lib.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/rotamer_library/fetch_data.py b/extras/data_generation/rotamer_library/fetch_data.py
index 5186ba08..44e1e50c 100644
--- a/extras/data_generation/rotamer_library/fetch_data.py
+++ b/extras/data_generation/rotamer_library/fetch_data.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/README b/extras/data_generation/structure_db/README
index 2286f335..7ca28a56 100644
--- a/extras/data_generation/structure_db/README
+++ b/extras/data_generation/structure_db/README
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/assign_structure_profiles.py b/extras/data_generation/structure_db/assign_structure_profiles.py
index 71d892cf..2486f712 100644
--- a/extras/data_generation/structure_db/assign_structure_profiles.py
+++ b/extras/data_generation/structure_db/assign_structure_profiles.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/build_structure_db.py b/extras/data_generation/structure_db/build_structure_db.py
index 43a25287..bb273126 100644
--- a/extras/data_generation/structure_db/build_structure_db.py
+++ b/extras/data_generation/structure_db/build_structure_db.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/create_structure_profiles.py b/extras/data_generation/structure_db/create_structure_profiles.py
index d4a558bd..e81973ae 100644
--- a/extras/data_generation/structure_db/create_structure_profiles.py
+++ b/extras/data_generation/structure_db/create_structure_profiles.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/get_data_from_smtl.py b/extras/data_generation/structure_db/get_data_from_smtl.py
index 986c10a7..59140bbd 100644
--- a/extras/data_generation/structure_db/get_data_from_smtl.py
+++ b/extras/data_generation/structure_db/get_data_from_smtl.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py b/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py
index d0e195c9..83fce130 100644
--- a/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py
+++ b/extras/data_generation/structure_db/prepare_slurm_submission_structure_profiles.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/data_generation/torsion_sampler/train_torsion_sampler.py b/extras/data_generation/torsion_sampler/train_torsion_sampler.py
index 9c0ea6fc..eae2cb39 100644
--- a/extras/data_generation/torsion_sampler/train_torsion_sampler.py
+++ b/extras/data_generation/torsion_sampler/train_torsion_sampler.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/__init__.py b/extras/pre_commit/pm3_csc/__init__.py
index d526e2cc..75a07693 100644
--- a/extras/pre_commit/pm3_csc/__init__.py
+++ b/extras/pre_commit/pm3_csc/__init__.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/base.py b/extras/pre_commit/pm3_csc/base.py
index d2fbf65b..cb1543a1 100644
--- a/extras/pre_commit/pm3_csc/base.py
+++ b/extras/pre_commit/pm3_csc/base.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/__init__.py b/extras/pre_commit/pm3_csc/filecheck/__init__.py
index 1d614bb5..17cb6fc2 100644
--- a/extras/pre_commit/pm3_csc/filecheck/__init__.py
+++ b/extras/pre_commit/pm3_csc/filecheck/__init__.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/base.py b/extras/pre_commit/pm3_csc/filecheck/base.py
index 95ab2274..a70fd759 100644
--- a/extras/pre_commit/pm3_csc/filecheck/base.py
+++ b/extras/pre_commit/pm3_csc/filecheck/base.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/ccode.py b/extras/pre_commit/pm3_csc/filecheck/ccode.py
index e5bfe8be..63c64c1d 100644
--- a/extras/pre_commit/pm3_csc/filecheck/ccode.py
+++ b/extras/pre_commit/pm3_csc/filecheck/ccode.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/cmake.py b/extras/pre_commit/pm3_csc/filecheck/cmake.py
index fde92de2..fe78dbf7 100644
--- a/extras/pre_commit/pm3_csc/filecheck/cmake.py
+++ b/extras/pre_commit/pm3_csc/filecheck/cmake.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/python.py b/extras/pre_commit/pm3_csc/filecheck/python.py
index a932330e..d540c153 100644
--- a/extras/pre_commit/pm3_csc/filecheck/python.py
+++ b/extras/pre_commit/pm3_csc/filecheck/python.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/rest.py b/extras/pre_commit/pm3_csc/filecheck/rest.py
index a3e5a4c6..24911437 100644
--- a/extras/pre_commit/pm3_csc/filecheck/rest.py
+++ b/extras/pre_commit/pm3_csc/filecheck/rest.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/shellscript.py b/extras/pre_commit/pm3_csc/filecheck/shellscript.py
index 73a95895..744d75f8 100644
--- a/extras/pre_commit/pm3_csc/filecheck/shellscript.py
+++ b/extras/pre_commit/pm3_csc/filecheck/shellscript.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/filecheck/text.py b/extras/pre_commit/pm3_csc/filecheck/text.py
index d4b59f37..32283a1c 100644
--- a/extras/pre_commit/pm3_csc/filecheck/text.py
+++ b/extras/pre_commit/pm3_csc/filecheck/text.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pm3_csc/git.py b/extras/pre_commit/pm3_csc/git.py
index ed9011ca..f061b82c 100644
--- a/extras/pre_commit/pm3_csc/git.py
+++ b/extras/pre_commit/pm3_csc/git.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/pre_commit/pre-commit b/extras/pre_commit/pre-commit
index df8eb506..7105e0b1 100644
--- a/extras/pre_commit/pre-commit
+++ b/extras/pre_commit/pre-commit
@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # pylint: disable=invalid-name
 
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/Makefile b/extras/sanity_checks/Makefile
index 79d2b586..ed240c0f 100644
--- a/extras/sanity_checks/Makefile
+++ b/extras/sanity_checks/Makefile
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/README b/extras/sanity_checks/README
index 81bbd702..533ed611 100644
--- a/extras/sanity_checks/README
+++ b/extras/sanity_checks/README
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/run_pipeline.py b/extras/sanity_checks/run_pipeline.py
index 4a39ea5c..3ae16ea9 100644
--- a/extras/sanity_checks/run_pipeline.py
+++ b/extras/sanity_checks/run_pipeline.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/test_all.py b/extras/sanity_checks/test_all.py
index 0de61ad7..b3544580 100644
--- a/extras/sanity_checks/test_all.py
+++ b/extras/sanity_checks/test_all.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/test_cpp.cc b/extras/sanity_checks/test_cpp.cc
index 9c8e3365..f43ae813 100644
--- a/extras/sanity_checks/test_cpp.cc
+++ b/extras/sanity_checks/test_cpp.cc
@@ -1,4 +1,4 @@
-// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 //                          Biozentrum - University of Basel
 // 
 // Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/sanity_checks/test_module.py b/extras/sanity_checks/test_module.py
index 7c0f3514..72993fc6 100644
--- a/extras/sanity_checks/test_module.py
+++ b/extras/sanity_checks/test_module.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/README b/extras/scoring_weight_training/README
index 3c6db6b7..93d912e8 100644
--- a/extras/scoring_weight_training/README
+++ b/extras/scoring_weight_training/README
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/analyze_bft_candidates.py b/extras/scoring_weight_training/analyze_bft_candidates.py
index 1cbc4dbb..54a9ec1d 100644
--- a/extras/scoring_weight_training/analyze_bft_candidates.py
+++ b/extras/scoring_weight_training/analyze_bft_candidates.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/analyze_bft_score_correlations.py b/extras/scoring_weight_training/analyze_bft_score_correlations.py
index b5956fa8..d7b865c7 100644
--- a/extras/scoring_weight_training/analyze_bft_score_correlations.py
+++ b/extras/scoring_weight_training/analyze_bft_score_correlations.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/analyze_bft_scores.py b/extras/scoring_weight_training/analyze_bft_scores.py
index 98276d0c..aef180e7 100644
--- a/extras/scoring_weight_training/analyze_bft_scores.py
+++ b/extras/scoring_weight_training/analyze_bft_scores.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/analyze_weights.py b/extras/scoring_weight_training/analyze_weights.py
index da4f9675..e94a36a4 100644
--- a/extras/scoring_weight_training/analyze_weights.py
+++ b/extras/scoring_weight_training/analyze_weights.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/collect_optimized_weights.py b/extras/scoring_weight_training/collect_optimized_weights.py
index c3d52b91..e7ca3a27 100644
--- a/extras/scoring_weight_training/collect_optimized_weights.py
+++ b/extras/scoring_weight_training/collect_optimized_weights.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/common.py b/extras/scoring_weight_training/common.py
index f0bcf55b..dc197819 100644
--- a/extras/scoring_weight_training/common.py
+++ b/extras/scoring_weight_training/common.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/generate_bft.py b/extras/scoring_weight_training/generate_bft.py
index 70b80750..1f16b72c 100644
--- a/extras/scoring_weight_training/generate_bft.py
+++ b/extras/scoring_weight_training/generate_bft.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/generate_bft_chunks.py b/extras/scoring_weight_training/generate_bft_chunks.py
index 4587bda8..60ca8619 100644
--- a/extras/scoring_weight_training/generate_bft_chunks.py
+++ b/extras/scoring_weight_training/generate_bft_chunks.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/generate_bft_dbs.py b/extras/scoring_weight_training/generate_bft_dbs.py
index 1eaa2105..dab8cf72 100644
--- a/extras/scoring_weight_training/generate_bft_dbs.py
+++ b/extras/scoring_weight_training/generate_bft_dbs.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/generate_bft_testset.py b/extras/scoring_weight_training/generate_bft_testset.py
index 0f03a89a..4033eec6 100644
--- a/extras/scoring_weight_training/generate_bft_testset.py
+++ b/extras/scoring_weight_training/generate_bft_testset.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/generate_training_bft.py b/extras/scoring_weight_training/generate_training_bft.py
index da3c499b..f6cedab0 100644
--- a/extras/scoring_weight_training/generate_training_bft.py
+++ b/extras/scoring_weight_training/generate_training_bft.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/get_weights_code.py b/extras/scoring_weight_training/get_weights_code.py
index b48b2067..2367d6a1 100644
--- a/extras/scoring_weight_training/get_weights_code.py
+++ b/extras/scoring_weight_training/get_weights_code.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/optimize_weights.py b/extras/scoring_weight_training/optimize_weights.py
index 257f9291..27a65164 100644
--- a/extras/scoring_weight_training/optimize_weights.py
+++ b/extras/scoring_weight_training/optimize_weights.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/optimize_weights_cma.py b/extras/scoring_weight_training/optimize_weights_cma.py
index 590a6202..11b31375 100644
--- a/extras/scoring_weight_training/optimize_weights_cma.py
+++ b/extras/scoring_weight_training/optimize_weights_cma.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/scoring_weight_training/run_all_optimizations.py b/extras/scoring_weight_training/run_all_optimizations.py
index 9753c0ac..de7157b3 100644
--- a/extras/scoring_weight_training/run_all_optimizations.py
+++ b/extras/scoring_weight_training/run_all_optimizations.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 #                          Biozentrum - University of Basel
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/extras/test_code/test.cc b/extras/test_code/test.cc
index 7920788f..df5077b8 100644
--- a/extras/test_code/test.cc
+++ b/extras/test_code/test.cc
@@ -1,4 +1,4 @@
-// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and 
+// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
 //                          Biozentrum - University of Basel
 // 
 // Licensed under the Apache License, Version 2.0 (the "License");
-- 
GitLab