From 956944d96a13fe34bdcb18f36f09287d39fa6e49 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Sun, 1 Apr 2018 23:30:32 +0200
Subject: [PATCH] fix links in doc
---
CMakeLists.txt | 2 +-
doc/buildsystem.rst | 6 +++---
doc/conf.py.in | 2 +-
doc/contributing.rst | 4 ++--
4 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/CMakeLists.txt b/CMakeLists.txt
index d708fa18..fa6ac65d 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -84,7 +84,7 @@ if(NOT DISABLE_DOCUMENTATION)
find_package(Sphinx ${PYTHON_VERSION} REQUIRED)
set(PYTHON_DOC_URL "https://docs.python.org/${PYTHON_VERSION}")
# set this to the URL corresponding to the version of OST you are using
- set(OST_DOC_URL "http://www.openstructure.org/docs/dev")
+ set(OST_DOC_URL "https://www.openstructure.org/docs/dev")
endif()
find_package(OPENSTRUCTURE 1.7 REQUIRED
COMPONENTS io mol seq seq_alg mol_alg conop img mol_mm)
diff --git a/doc/buildsystem.rst b/doc/buildsystem.rst
index 4bb19268..a601d619 100644
--- a/doc/buildsystem.rst
+++ b/doc/buildsystem.rst
@@ -143,11 +143,11 @@ safely delete the whole source folder.
.. |qmean| replace:: QMEAN
.. |eigen3| replace:: Eigen 3
.. |openmm| replace:: OpenMM
-.. _qmean: http://swissmodel.expasy.org/qmean/cgi/index.cgi?
-.. _ost_l: http://www.OpenStructure.org
+.. _qmean: https://swissmodel.expasy.org/qmean/
+.. _ost_l: https://www.OpenStructure.org
.. _cmake: https://cmake.org/
.. _python: https://www.python.org/
-.. _boost: http://www.boost.org/
+.. _boost: https://www.boost.org/
.. _eigen3: http://eigen.tuxfamily.org/index.php?title=Main_Page
.. _openmm: http://openmm.org
diff --git a/doc/conf.py.in b/doc/conf.py.in
index 3453b6e9..fddcc7ef 100644
--- a/doc/conf.py.in
+++ b/doc/conf.py.in
@@ -288,7 +288,7 @@ rst_epilog = """
.. |boost| replace:: Boost
.. |git| replace:: Git
.. |C++| replace:: C++
-.. _ost_s: http://www.OpenStructure.org
+.. _ost_s: https://www.OpenStructure.org
.. _nameattr: @PYTHON_DOC_URL@/library/__main__.html
.. _mainattr: @PYTHON_DOC_URL@/library/__main__.html
.. _descattr: @PYTHON_DOC_URL@/library/argparse.html#description
diff --git a/doc/contributing.rst b/doc/contributing.rst
index 832af70c..ae3c842c 100644
--- a/doc/contributing.rst
+++ b/doc/contributing.rst
@@ -201,7 +201,7 @@ sporting a single monolithic :file:`test_sidechain_reconstruction.py`.
|python| code is evaluated using its own :py_docs:`unit testing framework
<library/unittest.html>` with a little help from |ost_s|_ (|C++| uses the
|boost| `Test Library
-<http://www.boost.org/doc/libs/1_47_0/libs/test/doc/html/index.html>`_). The
+<https://www.boost.org/doc/libs/1_53_0/libs/test/doc/html/index.html>`_). The
basic scheme is to import your module, subclass :class:`unittest.TestCase` and
make the whole file runnable as script using the most common |nameattr|_
attribute. As an example we test the
@@ -477,7 +477,7 @@ repository comes with a top-level :file:`doc` directory.
While you should not spend to much time thinking about how to format
documentation, here is a helpful list of standard formatters:
-http://sphinx-doc.org/markup/inline.html
+http://sphinx-doc.org/en/stable/markup/inline.html
If you write new functionality for |project|, or fix bugs, feel free to extend
the :file:`CHANGELOG` file. It will be automatically pulled into the
--
GitLab