From a76f54cbefff26e1cb31838e187e22778a949ad1 Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Wed, 27 Apr 2016 13:52:27 +0200
Subject: [PATCH] SCHWED-872: doc. update
---
modelling/doc/index.rst | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/modelling/doc/index.rst b/modelling/doc/index.rst
index b5415e77..77095e72 100644
--- a/modelling/doc/index.rst
+++ b/modelling/doc/index.rst
@@ -87,7 +87,7 @@ Modelling Pipeline
:param include_ligands: True, if we wish to include ligands in the model. This
searches for ligands in all OST handles of the views
attached to the alignments. Ligands are identified
- with the "ligand" property in the handle (set by OST
+ with the `ligand` property in the handle (set by OST
based on HET records) or by the chain name '_' (as set
in SMTL). All ligands are added to a new chain named
'_'.
@@ -213,7 +213,11 @@ Modelling Handle class
.. attribute:: model
- The resulting model.
+ The resulting model. This includes one chain per target chain (in the same
+ order as the sequences in `seqres`) and (if they were included) a chain
+ named '_' for ligands. You can therefore access `model.chains` items and
+ `seqres` items with the same indexing and the optional ligand chain follows
+ afterwards.
:type: :class:`~ost.mol.EntityHandle`
--
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