diff --git a/doc/buildsystem.rst b/doc/buildsystem.rst
index fbb9656f7142cfcb43fa62643f03ca3e3cb866e2..248a7207b59e1ccf6cfd58729921fa86fe71c8c9 100644
--- a/doc/buildsystem.rst
+++ b/doc/buildsystem.rst
@@ -3,13 +3,14 @@ Building |project|
--------------------------------------------------------------------------------
Dependencies
--------------------------------------------------------------------------------
-|project| is build on top of |ost_l|_ (|ost_s|) and needs at least version
-1.4. To create the build system, |cmake|_ is required in version 2.8.7 or
-higher. |python|_ works well from version 2.7. For |ost_s| and the |C++| bit of
-|project|, |boost|_ is required in version 1.47.0. To build documentation,
-|sphinx|_ 1.2b1 is used.
+|project| is build on top of |ost_l|_ (|ost_s|), requiring at least version
+1.4, and |qmean|_. To create the build system, |cmake|_ is required in version
+2.8.7 or higher. |python|_ works well from version 2.7. For |ost_s| and the
+|C++| bit of |project|, |boost|_ is required in version 1.47.0 (the same as
+used for |ost_s|). To build documentation, |sphinx|_ 1.2b1 is used.
* |ost_s|_ 1.4
+* |qmean|_
* |cmake|_ 2.8.7
* |python|_ 2.7
* |boost|_ 1.47.0
@@ -25,13 +26,13 @@ right from a shell with the directory containing the top-level
.. code-block:: console
- $ cmake . -DOST_ROOT=<PATH TO OST>
+ $ cmake . -DOST_ROOT=<PATH TO OST> -DQMEAN_ROOT=<PATH TO QMEAN>
-For us, at least a pointer to the |ost_s| installation directory is needed,
-handed over to |cmake| by ``-D`` into the variable ``OST_ROOT``. Other important
-variables would be ``BOOST_ROOT``, set to the same path as for |ost_s| and
-probably ``PYTHON_ROOT`` if you want to use a certain |python|. Don't forget to
-put a ``-D`` in front of options.
+For us, at least pointers to the |ost_s| and |qmean| installation directories
+are needed, handed over to |cmake| by ``-D`` into the variables ``OST_ROOT``
+and ``QMEAN_ROOT``. Other important variables would be ``BOOST_ROOT``, set to
+the same path as for |ost_s| and probably ``PYTHON_ROOT`` if you want to use a
+certain |python|. Don't forget to put a ``-D`` in front of options.
Here is a list of more options used within |project|:
@@ -43,34 +44,51 @@ Here is a list of more options used within |project|:
Instead of calling |cmake| by yourself, there is the :file:`conf-scripts`
directory, providing smallish scripts to invoke |cmake| the right way for
-various systems. Usually those scripts just need the |ost_s| path and the
-location of the top-level :file:`CMakeLists.txt`.
+various systems. Usually those scripts just need the |ost_s| and |qmean| paths
+and the location of the top-level :file:`CMakeLists.txt`.
What we highly recommend is going for out-of-source builds. This means creating
-a dedicated directory for building |project| and calling |cmake|/ a
+a dedicated directory for building |project| and calling |cmake| or a
configuration script from there. This way, you can have several builds with
different configurations. Also if anything goes wrong, just remove the build
directory to get to a clean state again. No searching for |cmake| cache files or
checking if certain files really got rebuild and similar things required.
-Important Make Targets
+Running Make
--------------------------------------------------------------------------------
+After configuring, you want to build |project| by
+
+.. code-block:: console
+
+ $ make
+
+to populate the :file:`stage` directory with a ready-to-go version of the
+latest code.
+
+.. index::
+ single: Make targets
+
Beside the usual ``make all`` and other default targets, there are a few
special targets:
-* ``check`` Runs unit tests and if |cmake| was invoked in its standard
- configuration also |sphinx| with the ``doctest`` and ``linkcheck`` builders
-* ``html`` Creates documentation as web page using the |sphinx| ``html`` builder
-* ``man`` Creates a manual page using the |sphinx| ``man`` builder
-* ``doc`` Creates documentation using the ``html`` and ``man`` targets
-* ``help`` Prints a list of targets available
-
+* ``check`` :index:`make check` Runs unit tests and if |cmake| was invoked in
+ its standard configuration also |sphinx| with the ``doctest`` and
+ ``linkcheck`` builders
+* ``html`` :index:`make html` Creates documentation as web page using the
+ |sphinx| ``html`` builder
+* ``man`` :index:`make man` Creates a manual page using the |sphinx| ``man``
+ builder
+* ``doc`` :index:`make doc` Creates documentation using the ``html`` and
+ ``man`` targets
+* ``help`` :index:`make help` Prints a list of targets available
+.. |qmean| replace:: QMEAN
+.. _qmean: http://swissmodel.expasy.org/qmean/cgi/index.cgi?
.. _ost_l: http://www.OpenStructure.org
.. _cmake: http://www.cmake.org/
.. _python: https://www.python.org/
.. _boost: http://www.boost.org/
.. LocalWords: cmake makefiles CMakeLists txt DOCTEST LINKCHECK conf html
-.. LocalWords: doctest linkcheck
+.. LocalWords: doctest linkcheck qmean DQMEAN
diff --git a/doc/html/.doctrees/buildsystem.doctree b/doc/html/.doctrees/buildsystem.doctree
index 78e3ce686306acf85cac4026a4945ca4e185bc2b..f1321adc41fa0acb10d413ccb1f2a44da6533ff4 100644
Binary files a/doc/html/.doctrees/buildsystem.doctree and b/doc/html/.doctrees/buildsystem.doctree differ
diff --git a/doc/html/.doctrees/core/argcheck.doctree b/doc/html/.doctrees/core/argcheck.doctree
index 311565bf1c13c0fcb1d7245de2dc581d2276df9f..e8ebe02f0f9383e5f8282294b7e64c8590bf3b29 100644
Binary files a/doc/html/.doctrees/core/argcheck.doctree and b/doc/html/.doctrees/core/argcheck.doctree differ
diff --git a/doc/html/.doctrees/core/index.doctree b/doc/html/.doctrees/core/index.doctree
index 8def255d1b18d1f44cf7a617bdee1f4d53d2e8e9..e4fa8e5f34e1a8eabba3b9d360ec67a120404836 100644
Binary files a/doc/html/.doctrees/core/index.doctree and b/doc/html/.doctrees/core/index.doctree differ
diff --git a/doc/html/.doctrees/environment.pickle b/doc/html/.doctrees/environment.pickle
index 4087b18071f3d0651afad898362cee1143c6eaac..1c33f9ba708dc5bf34314f1cde159d79ecbd5007 100644
Binary files a/doc/html/.doctrees/environment.pickle and b/doc/html/.doctrees/environment.pickle differ
diff --git a/doc/html/_modules/index.html b/doc/html/_modules/index.html
index 8882e5649dafa9edac6d4259aa83eff9aa7fdfed..3af2c50ce44fc27c35f390a5fcfd6c13ad979373 100644
--- a/doc/html/_modules/index.html
+++ b/doc/html/_modules/index.html
@@ -85,7 +85,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/_modules/promod3/core/argcheck.html b/doc/html/_modules/promod3/core/argcheck.html
index fe054b653e24248041c3b214520c47dcc9be43b2..45c289d84de1fd9d5fbf27542595483fda275e34 100644
--- a/doc/html/_modules/promod3/core/argcheck.html
+++ b/doc/html/_modules/promod3/core/argcheck.html
@@ -174,7 +174,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/_sources/buildsystem.txt b/doc/html/_sources/buildsystem.txt
index fbb9656f7142cfcb43fa62643f03ca3e3cb866e2..248a7207b59e1ccf6cfd58729921fa86fe71c8c9 100644
--- a/doc/html/_sources/buildsystem.txt
+++ b/doc/html/_sources/buildsystem.txt
@@ -3,13 +3,14 @@ Building |project|
--------------------------------------------------------------------------------
Dependencies
--------------------------------------------------------------------------------
-|project| is build on top of |ost_l|_ (|ost_s|) and needs at least version
-1.4. To create the build system, |cmake|_ is required in version 2.8.7 or
-higher. |python|_ works well from version 2.7. For |ost_s| and the |C++| bit of
-|project|, |boost|_ is required in version 1.47.0. To build documentation,
-|sphinx|_ 1.2b1 is used.
+|project| is build on top of |ost_l|_ (|ost_s|), requiring at least version
+1.4, and |qmean|_. To create the build system, |cmake|_ is required in version
+2.8.7 or higher. |python|_ works well from version 2.7. For |ost_s| and the
+|C++| bit of |project|, |boost|_ is required in version 1.47.0 (the same as
+used for |ost_s|). To build documentation, |sphinx|_ 1.2b1 is used.
* |ost_s|_ 1.4
+* |qmean|_
* |cmake|_ 2.8.7
* |python|_ 2.7
* |boost|_ 1.47.0
@@ -25,13 +26,13 @@ right from a shell with the directory containing the top-level
.. code-block:: console
- $ cmake . -DOST_ROOT=<PATH TO OST>
+ $ cmake . -DOST_ROOT=<PATH TO OST> -DQMEAN_ROOT=<PATH TO QMEAN>
-For us, at least a pointer to the |ost_s| installation directory is needed,
-handed over to |cmake| by ``-D`` into the variable ``OST_ROOT``. Other important
-variables would be ``BOOST_ROOT``, set to the same path as for |ost_s| and
-probably ``PYTHON_ROOT`` if you want to use a certain |python|. Don't forget to
-put a ``-D`` in front of options.
+For us, at least pointers to the |ost_s| and |qmean| installation directories
+are needed, handed over to |cmake| by ``-D`` into the variables ``OST_ROOT``
+and ``QMEAN_ROOT``. Other important variables would be ``BOOST_ROOT``, set to
+the same path as for |ost_s| and probably ``PYTHON_ROOT`` if you want to use a
+certain |python|. Don't forget to put a ``-D`` in front of options.
Here is a list of more options used within |project|:
@@ -43,34 +44,51 @@ Here is a list of more options used within |project|:
Instead of calling |cmake| by yourself, there is the :file:`conf-scripts`
directory, providing smallish scripts to invoke |cmake| the right way for
-various systems. Usually those scripts just need the |ost_s| path and the
-location of the top-level :file:`CMakeLists.txt`.
+various systems. Usually those scripts just need the |ost_s| and |qmean| paths
+and the location of the top-level :file:`CMakeLists.txt`.
What we highly recommend is going for out-of-source builds. This means creating
-a dedicated directory for building |project| and calling |cmake|/ a
+a dedicated directory for building |project| and calling |cmake| or a
configuration script from there. This way, you can have several builds with
different configurations. Also if anything goes wrong, just remove the build
directory to get to a clean state again. No searching for |cmake| cache files or
checking if certain files really got rebuild and similar things required.
-Important Make Targets
+Running Make
--------------------------------------------------------------------------------
+After configuring, you want to build |project| by
+
+.. code-block:: console
+
+ $ make
+
+to populate the :file:`stage` directory with a ready-to-go version of the
+latest code.
+
+.. index::
+ single: Make targets
+
Beside the usual ``make all`` and other default targets, there are a few
special targets:
-* ``check`` Runs unit tests and if |cmake| was invoked in its standard
- configuration also |sphinx| with the ``doctest`` and ``linkcheck`` builders
-* ``html`` Creates documentation as web page using the |sphinx| ``html`` builder
-* ``man`` Creates a manual page using the |sphinx| ``man`` builder
-* ``doc`` Creates documentation using the ``html`` and ``man`` targets
-* ``help`` Prints a list of targets available
-
+* ``check`` :index:`make check` Runs unit tests and if |cmake| was invoked in
+ its standard configuration also |sphinx| with the ``doctest`` and
+ ``linkcheck`` builders
+* ``html`` :index:`make html` Creates documentation as web page using the
+ |sphinx| ``html`` builder
+* ``man`` :index:`make man` Creates a manual page using the |sphinx| ``man``
+ builder
+* ``doc`` :index:`make doc` Creates documentation using the ``html`` and
+ ``man`` targets
+* ``help`` :index:`make help` Prints a list of targets available
+.. |qmean| replace:: QMEAN
+.. _qmean: http://swissmodel.expasy.org/qmean/cgi/index.cgi?
.. _ost_l: http://www.OpenStructure.org
.. _cmake: http://www.cmake.org/
.. _python: https://www.python.org/
.. _boost: http://www.boost.org/
.. LocalWords: cmake makefiles CMakeLists txt DOCTEST LINKCHECK conf html
-.. LocalWords: doctest linkcheck
+.. LocalWords: doctest linkcheck qmean DQMEAN
diff --git a/doc/html/buildsystem.html b/doc/html/buildsystem.html
index f166ac3cba940c09def6d50481618f31f6e1639e..be1669cdb06ab01b97fcfa067fc8d24ac3da6144 100644
--- a/doc/html/buildsystem.html
+++ b/doc/html/buildsystem.html
@@ -58,13 +58,14 @@
<h1>Building ProMod3<a class="headerlink" href="#building-project" title="Permalink to this headline">¶</a></h1>
<div class="section" id="dependencies">
<h2>Dependencies<a class="headerlink" href="#dependencies" title="Permalink to this headline">¶</a></h2>
-<p>ProMod3 is build on top of <a class="reference external" href="http://www.OpenStructure.org">OpenStructure</a> (OST) and needs at least version
-1.4. To create the build system, <a class="reference external" href="http://www.cmake.org/">CMake</a> is required in version 2.8.7 or
-higher. <a class="reference external" href="https://www.python.org/">Python</a> works well from version 2.7. For OST and the C++ bit of
-ProMod3, <a class="reference external" href="http://www.boost.org/">Boost</a> is required in version 1.47.0. To build documentation,
-<a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> 1.2b1 is used.</p>
+<p>ProMod3 is build on top of <a class="reference external" href="http://www.OpenStructure.org">OpenStructure</a> (OST), requiring at least version
+1.4, and <a class="reference external" href="http://swissmodel.expasy.org/qmean/cgi/index.cgi?">QMEAN</a>. To create the build system, <a class="reference external" href="http://www.cmake.org/">CMake</a> is required in version
+2.8.7 or higher. <a class="reference external" href="https://www.python.org/">Python</a> works well from version 2.7. For OST and the
+C++ bit of ProMod3, <a class="reference external" href="http://www.boost.org/">Boost</a> is required in version 1.47.0 (the same as
+used for OST). To build documentation, <a class="reference external" href="http://sphinx-doc.org/">Sphinx</a> 1.2b1 is used.</p>
<ul class="simple">
<li><a class="reference external" href="http://www.OpenStructure.org">OST</a> 1.4</li>
+<li><a class="reference external" href="http://swissmodel.expasy.org/qmean/cgi/index.cgi?">QMEAN</a></li>
<li><a class="reference external" href="http://www.cmake.org/">CMake</a> 2.8.7</li>
<li><a class="reference external" href="https://www.python.org/">Python</a> 2.7</li>
<li><a class="reference external" href="http://www.boost.org/">Boost</a> 1.47.0</li>
@@ -77,14 +78,14 @@ ProMod3, <a class="reference external" href="http://www.boost.org/">Boost</a> is
and certain directories needed for building ProMod3. Basically it is called
right from a shell with the directory containing the top-level
<tt class="file docutils literal"><span class="pre">CMakeLists.txt</span></tt> as an argument:</p>
-<div class="highlight-console"><div class="highlight"><pre><span class="gp">$</span> cmake . -DOST_ROOT<span class="o">=</span><PATH TO OST>
+<div class="highlight-console"><div class="highlight"><pre><span class="gp">$</span> cmake . -DOST_ROOT<span class="o">=</span><PATH TO OST> -DQMEAN_ROOT<span class="o">=</span><PATH TO QMEAN>
</pre></div>
</div>
-<p>For us, at least a pointer to the OST installation directory is needed,
-handed over to CMake by <tt class="docutils literal"><span class="pre">-D</span></tt> into the variable <tt class="docutils literal"><span class="pre">OST_ROOT</span></tt>. Other important
-variables would be <tt class="docutils literal"><span class="pre">BOOST_ROOT</span></tt>, set to the same path as for OST and
-probably <tt class="docutils literal"><span class="pre">PYTHON_ROOT</span></tt> if you want to use a certain Python. Don’t forget to
-put a <tt class="docutils literal"><span class="pre">-D</span></tt> in front of options.</p>
+<p>For us, at least pointers to the OST and QMEAN installation directories
+are needed, handed over to CMake by <tt class="docutils literal"><span class="pre">-D</span></tt> into the variables <tt class="docutils literal"><span class="pre">OST_ROOT</span></tt>
+and <tt class="docutils literal"><span class="pre">QMEAN_ROOT</span></tt>. Other important variables would be <tt class="docutils literal"><span class="pre">BOOST_ROOT</span></tt>, set to
+the same path as for OST and probably <tt class="docutils literal"><span class="pre">PYTHON_ROOT</span></tt> if you want to use a
+certain Python. Don’t forget to put a <tt class="docutils literal"><span class="pre">-D</span></tt> in front of options.</p>
<p>Here is a list of more options used within ProMod3:</p>
<ul class="simple">
<li><tt class="docutils literal"><span class="pre">DISABLE_DOCUMENTATION</span></tt> Don’t build documentation, don’t search for Sphinx</li>
@@ -95,25 +96,35 @@ put a <tt class="docutils literal"><span class="pre">-D</span></tt> in front of
</ul>
<p>Instead of calling CMake by yourself, there is the <tt class="file docutils literal"><span class="pre">conf-scripts</span></tt>
directory, providing smallish scripts to invoke CMake the right way for
-various systems. Usually those scripts just need the OST path and the
-location of the top-level <tt class="file docutils literal"><span class="pre">CMakeLists.txt</span></tt>.</p>
+various systems. Usually those scripts just need the OST and QMEAN paths
+and the location of the top-level <tt class="file docutils literal"><span class="pre">CMakeLists.txt</span></tt>.</p>
<p>What we highly recommend is going for out-of-source builds. This means creating
-a dedicated directory for building ProMod3 and calling CMake/ a
+a dedicated directory for building ProMod3 and calling CMake or a
configuration script from there. This way, you can have several builds with
different configurations. Also if anything goes wrong, just remove the build
directory to get to a clean state again. No searching for CMake cache files or
checking if certain files really got rebuild and similar things required.</p>
-<div class="section" id="important-make-targets">
-<h3>Important Make Targets<a class="headerlink" href="#important-make-targets" title="Permalink to this headline">¶</a></h3>
-<p>Beside the usual <tt class="docutils literal"><span class="pre">make</span> <span class="pre">all</span></tt> and other default targets, there are a few
+<div class="section" id="running-make">
+<h3>Running Make<a class="headerlink" href="#running-make" title="Permalink to this headline">¶</a></h3>
+<p>After configuring, you want to build ProMod3 by</p>
+<div class="highlight-console"><div class="highlight"><pre><span class="gp">$</span> make
+</pre></div>
+</div>
+<p>to populate the <tt class="file docutils literal"><span class="pre">stage</span></tt> directory with a ready-to-go version of the
+latest code.</p>
+<p id="index-0">Beside the usual <tt class="docutils literal"><span class="pre">make</span> <span class="pre">all</span></tt> and other default targets, there are a few
special targets:</p>
<ul class="simple">
-<li><tt class="docutils literal"><span class="pre">check</span></tt> Runs unit tests and if CMake was invoked in its standard
-configuration also Sphinx with the <tt class="docutils literal"><span class="pre">doctest</span></tt> and <tt class="docutils literal"><span class="pre">linkcheck</span></tt> builders</li>
-<li><tt class="docutils literal"><span class="pre">html</span></tt> Creates documentation as web page using the Sphinx <tt class="docutils literal"><span class="pre">html</span></tt> builder</li>
-<li><tt class="docutils literal"><span class="pre">man</span></tt> Creates a manual page using the Sphinx <tt class="docutils literal"><span class="pre">man</span></tt> builder</li>
-<li><tt class="docutils literal"><span class="pre">doc</span></tt> Creates documentation using the <tt class="docutils literal"><span class="pre">html</span></tt> and <tt class="docutils literal"><span class="pre">man</span></tt> targets</li>
-<li><tt class="docutils literal"><span class="pre">help</span></tt> Prints a list of targets available</li>
+<li><tt class="docutils literal"><span class="pre">check</span></tt> <span class="target" id="index-1"></span>make check Runs unit tests and if CMake was invoked in
+its standard configuration also Sphinx with the <tt class="docutils literal"><span class="pre">doctest</span></tt> and
+<tt class="docutils literal"><span class="pre">linkcheck</span></tt> builders</li>
+<li><tt class="docutils literal"><span class="pre">html</span></tt> <span class="target" id="index-2"></span>make html Creates documentation as web page using the
+Sphinx <tt class="docutils literal"><span class="pre">html</span></tt> builder</li>
+<li><tt class="docutils literal"><span class="pre">man</span></tt> <span class="target" id="index-3"></span>make man Creates a manual page using the Sphinx <tt class="docutils literal"><span class="pre">man</span></tt>
+builder</li>
+<li><tt class="docutils literal"><span class="pre">doc</span></tt> <span class="target" id="index-4"></span>make doc Creates documentation using the <tt class="docutils literal"><span class="pre">html</span></tt> and
+<tt class="docutils literal"><span class="pre">man</span></tt> targets</li>
+<li><tt class="docutils literal"><span class="pre">help</span></tt> <span class="target" id="index-5"></span>make help Prints a list of targets available</li>
</ul>
</div>
</div>
@@ -130,7 +141,7 @@ configuration also Sphinx with the <tt class="docutils literal"><span class="pre
<li><a class="reference internal" href="#">Building ProMod3</a><ul>
<li><a class="reference internal" href="#dependencies">Dependencies</a></li>
<li><a class="reference internal" href="#using-cmake">Using CMake</a><ul>
-<li><a class="reference internal" href="#important-make-targets">Important Make Targets</a></li>
+<li><a class="reference internal" href="#running-make">Running Make</a></li>
</ul>
</li>
</ul>
@@ -186,7 +197,7 @@ configuration also Sphinx with the <tt class="docutils literal"><span class="pre
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:04, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/core/argcheck.html b/doc/html/core/argcheck.html
index 6830e08598bea94b5a52fc5534ec93c932125b10..87da7739010efb097ea0c53d4ba03e14c222b70d 100644
--- a/doc/html/core/argcheck.html
+++ b/doc/html/core/argcheck.html
@@ -217,7 +217,7 @@ shell. <tt class="docutils literal"><span class="pre">0</span></tt> is tradition
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:04, 2014.
+ Last updated on Jun 26 16:15, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/core/index.html b/doc/html/core/index.html
index 456425c8558c93f07f8f265547846b3aa892fda4..391743016b2fd3ef8b4002ee92b45dd88263f3b1 100644
--- a/doc/html/core/index.html
+++ b/doc/html/core/index.html
@@ -123,7 +123,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:04, 2014.
+ Last updated on Jun 26 16:15, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/developers.html b/doc/html/developers.html
index 06588d82265fa678df136fe153e1c5523ab38c51..c03708a1d704e6d5137f5db8851e80e67de9ed5b 100644
--- a/doc/html/developers.html
+++ b/doc/html/developers.html
@@ -139,7 +139,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/genindex.html b/doc/html/genindex.html
index 7bd396ae6df9316e9e19bdb438a5fa7444000db4..0c7b71b0af48c558bba0c6c54638fef21cf99e76 100644
--- a/doc/html/genindex.html
+++ b/doc/html/genindex.html
@@ -179,6 +179,32 @@
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%" valign="top"><dl>
+ <dt><a href="buildsystem.html#index-1">make check</a>
+ </dt>
+
+
+ <dt><a href="buildsystem.html#index-4">make doc</a>
+ </dt>
+
+
+ <dt><a href="buildsystem.html#index-5">make help</a>
+ </dt>
+
+
+ <dt><a href="buildsystem.html#index-2">make html</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="buildsystem.html#index-3">make man</a>
+ </dt>
+
+
+ <dt><a href="buildsystem.html#index-0">Make targets</a>
+ </dt>
+
+
<dt><a href="meld/loop.html#sm.meld.LoopCandidates.model">model (sm.meld.LoopCandidates attribute)</a>
</dt>
@@ -308,7 +334,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/index.html b/doc/html/index.html
index 55592275790d456e43399e973fec6266f9c90df5..889a15068d9e12b1cab97df435454daebfca4f46 100644
--- a/doc/html/index.html
+++ b/doc/html/index.html
@@ -134,7 +134,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/py-modindex.html b/doc/html/py-modindex.html
index 641099bfe8e3a520c33346ee100507efaadddea6..b3827e5dbedc0efb5dbfaa604f7b39003827a4e0 100644
--- a/doc/html/py-modindex.html
+++ b/doc/html/py-modindex.html
@@ -113,7 +113,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/search.html b/doc/html/search.html
index dbfa8d260b93483448f6c6ba6c2c2745e9f5f597..3bb78e7c396b3d3024a74162be7f764f8d3fa089 100644
--- a/doc/html/search.html
+++ b/doc/html/search.html
@@ -99,7 +99,7 @@
</div>
<div class="footer">
© Copyright 2013, Bienchen.
- Last updated on Jun 19 11:36, 2014.
+ Last updated on Jul 03 10:51, 2014.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2b1.
</div>
</body>
diff --git a/doc/html/searchindex.js b/doc/html/searchindex.js
index 9487f75efd2133ed092d08213aeb72cc4ade1269..b5660a1565bd0c5d767a5d741627270a5b175713 100644
--- a/doc/html/searchindex.js
+++ b/doc/html/searchindex.js
@@ -1 +1 @@
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