From faf992c102e49c78487040751875c4fef7b74e19 Mon Sep 17 00:00:00 2001 From: Stefan Bienert <stefan.bienert@unibas.ch> Date: Wed, 12 Feb 2020 16:39:21 +0100 Subject: [PATCH] Bump loop module to (c) 2020 --- loop/data/convert_binaries.py | 2 +- loop/doc/all_atom.rst | 2 +- loop/doc/backbone.rst | 2 +- loop/doc/index.rst | 2 +- loop/doc/load_loop_objects.rst | 2 +- loop/doc/mm_system_creation.rst | 2 +- loop/doc/structure_db.rst | 2 +- loop/doc/torsion_sampler.rst | 2 +- loop/pymod/__init__.py | 2 +- loop/pymod/export_all_atom_env.cc | 2 +- loop/pymod/export_all_atom_positions.cc | 2 +- loop/pymod/export_amino_acid_atoms.cc | 2 +- loop/pymod/export_backbone.cc | 2 +- loop/pymod/export_forcefield_lookup.cc | 2 +- loop/pymod/export_frag_db.cc | 2 +- loop/pymod/export_fragger.cc | 2 +- loop/pymod/export_loop_object_loader.cc | 2 +- loop/pymod/export_mm_system_creator.cc | 2 +- loop/pymod/export_psipred_prediction.cc | 2 +- loop/pymod/export_structure_db.cc | 2 +- loop/pymod/export_torsion_sampler.cc | 2 +- loop/pymod/wrap_loop.cc | 2 +- loop/src/all_atom_env.cc | 2 +- loop/src/all_atom_env.hh | 2 +- loop/src/all_atom_positions.cc | 2 +- loop/src/all_atom_positions.hh | 2 +- loop/src/amino_acid_atoms.cc | 2 +- loop/src/amino_acid_atoms.hh | 2 +- loop/src/backbone.cc | 2 +- loop/src/backbone.hh | 2 +- loop/src/bb_trace_param.cc | 2 +- loop/src/bb_trace_param.hh | 2 +- loop/src/data_bag.hh | 2 +- loop/src/dense_hash_table.hh | 2 +- loop/src/dense_map.hh | 2 +- loop/src/density_creator.cc | 2 +- loop/src/density_creator.hh | 2 +- loop/src/forcefield_lookup.cc | 2 +- loop/src/forcefield_lookup.hh | 2 +- loop/src/frag_db.cc | 2 +- loop/src/frag_db.hh | 2 +- loop/src/fragger.cc | 2 +- loop/src/fragger.hh | 2 +- loop/src/hydrogen_constructor.cc | 2 +- loop/src/hydrogen_constructor.hh | 2 +- loop/src/hydrogen_rule_lookup.cc | 2 +- loop/src/hydrogen_rule_lookup.hh | 2 +- loop/src/idx_handler.cc | 2 +- loop/src/idx_handler.hh | 2 +- loop/src/loop_object_loader.cc | 2 +- loop/src/loop_object_loader.hh | 2 +- loop/src/mm_system_creator.cc | 2 +- loop/src/mm_system_creator.hh | 2 +- loop/src/paged_array.hh | 2 +- loop/src/psipred_prediction.cc | 2 +- loop/src/psipred_prediction.hh | 2 +- loop/src/sidechain_atom_constructor.cc | 2 +- loop/src/sidechain_atom_constructor.hh | 2 +- loop/src/sidechain_atom_rule_lookup.cc | 2 +- loop/src/sidechain_atom_rule_lookup.hh | 2 +- loop/src/stem_geom.hh | 2 +- loop/src/structure_db.cc | 2 +- loop/src/structure_db.hh | 2 +- loop/src/structure_db_custom_types.hh | 2 +- loop/src/torsion_sampler.cc | 2 +- loop/src/torsion_sampler.hh | 2 +- loop/src/ushort_vec.hh | 2 +- loop/tests/test_all_atom_env.cc | 2 +- loop/tests/test_all_atom_positions.cc | 2 +- loop/tests/test_amino_acid_atoms.cc | 2 +- loop/tests/test_backbone.cc | 2 +- loop/tests/test_forcefield.cc | 2 +- loop/tests/test_hydrogens.cc | 2 +- loop/tests/test_idx_handler.cc | 2 +- loop/tests/test_mm_system_creator.cc | 2 +- loop/tests/test_psipred_prediction.cc | 2 +- loop/tests/test_sidechain_construction.cc | 2 +- loop/tests/test_structuredb.cc | 2 +- loop/tests/test_torsion_sampler.cc | 2 +- loop/tests/tests.cc | 2 +- 80 files changed, 80 insertions(+), 80 deletions(-) diff --git a/loop/data/convert_binaries.py b/loop/data/convert_binaries.py index 1dced49d..07161db8 100644 --- a/loop/data/convert_binaries.py +++ b/loop/data/convert_binaries.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/all_atom.rst b/loop/doc/all_atom.rst index eaeb2947..f971b072 100644 --- a/loop/doc/all_atom.rst +++ b/loop/doc/all_atom.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/backbone.rst b/loop/doc/backbone.rst index e5e2d996..568f331b 100644 --- a/loop/doc/backbone.rst +++ b/loop/doc/backbone.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/index.rst b/loop/doc/index.rst index 1b4199c0..bff3ce8d 100644 --- a/loop/doc/index.rst +++ b/loop/doc/index.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/load_loop_objects.rst b/loop/doc/load_loop_objects.rst index a8410bea..2faa022b 100644 --- a/loop/doc/load_loop_objects.rst +++ b/loop/doc/load_loop_objects.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/mm_system_creation.rst b/loop/doc/mm_system_creation.rst index 87b6fb05..ff50bca9 100644 --- a/loop/doc/mm_system_creation.rst +++ b/loop/doc/mm_system_creation.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/structure_db.rst b/loop/doc/structure_db.rst index 756afe78..152ef605 100644 --- a/loop/doc/structure_db.rst +++ b/loop/doc/structure_db.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/doc/torsion_sampler.rst b/loop/doc/torsion_sampler.rst index 8344079a..00c0c710 100644 --- a/loop/doc/torsion_sampler.rst +++ b/loop/doc/torsion_sampler.rst @@ -1,4 +1,4 @@ -.. Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +.. Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and .. Biozentrum - University of Basel .. .. Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/__init__.py b/loop/pymod/__init__.py index a10e1ac4..876c95cc 100644 --- a/loop/pymod/__init__.py +++ b/loop/pymod/__init__.py @@ -1,4 +1,4 @@ -# Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +# Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and # Biozentrum - University of Basel # # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_all_atom_env.cc b/loop/pymod/export_all_atom_env.cc index 552bc613..5a813d6e 100644 --- a/loop/pymod/export_all_atom_env.cc +++ b/loop/pymod/export_all_atom_env.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_all_atom_positions.cc b/loop/pymod/export_all_atom_positions.cc index 143020cd..3514c132 100644 --- a/loop/pymod/export_all_atom_positions.cc +++ b/loop/pymod/export_all_atom_positions.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_amino_acid_atoms.cc b/loop/pymod/export_amino_acid_atoms.cc index bd163ca2..2f599712 100644 --- a/loop/pymod/export_amino_acid_atoms.cc +++ b/loop/pymod/export_amino_acid_atoms.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_backbone.cc b/loop/pymod/export_backbone.cc index d7642b12..d704e1d1 100644 --- a/loop/pymod/export_backbone.cc +++ b/loop/pymod/export_backbone.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_forcefield_lookup.cc b/loop/pymod/export_forcefield_lookup.cc index 7d56ce42..536c83ef 100644 --- a/loop/pymod/export_forcefield_lookup.cc +++ b/loop/pymod/export_forcefield_lookup.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_frag_db.cc b/loop/pymod/export_frag_db.cc index c5b7c599..157b9cd9 100644 --- a/loop/pymod/export_frag_db.cc +++ b/loop/pymod/export_frag_db.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_fragger.cc b/loop/pymod/export_fragger.cc index d6afcf0f..24c66038 100644 --- a/loop/pymod/export_fragger.cc +++ b/loop/pymod/export_fragger.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_loop_object_loader.cc b/loop/pymod/export_loop_object_loader.cc index 48dcf12c..4fa2aa1e 100644 --- a/loop/pymod/export_loop_object_loader.cc +++ b/loop/pymod/export_loop_object_loader.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_mm_system_creator.cc b/loop/pymod/export_mm_system_creator.cc index cffb7509..c90337b4 100644 --- a/loop/pymod/export_mm_system_creator.cc +++ b/loop/pymod/export_mm_system_creator.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_psipred_prediction.cc b/loop/pymod/export_psipred_prediction.cc index 18eca538..7bf3f41b 100644 --- a/loop/pymod/export_psipred_prediction.cc +++ b/loop/pymod/export_psipred_prediction.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_structure_db.cc b/loop/pymod/export_structure_db.cc index 869efa2e..6bf89562 100644 --- a/loop/pymod/export_structure_db.cc +++ b/loop/pymod/export_structure_db.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/export_torsion_sampler.cc b/loop/pymod/export_torsion_sampler.cc index ead2f96d..a17bb948 100644 --- a/loop/pymod/export_torsion_sampler.cc +++ b/loop/pymod/export_torsion_sampler.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/pymod/wrap_loop.cc b/loop/pymod/wrap_loop.cc index 39aa16ae..a8328b22 100644 --- a/loop/pymod/wrap_loop.cc +++ b/loop/pymod/wrap_loop.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/all_atom_env.cc b/loop/src/all_atom_env.cc index 991e90c7..c54712ff 100644 --- a/loop/src/all_atom_env.cc +++ b/loop/src/all_atom_env.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/all_atom_env.hh b/loop/src/all_atom_env.hh index f39cf743..b3286ac3 100644 --- a/loop/src/all_atom_env.hh +++ b/loop/src/all_atom_env.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/all_atom_positions.cc b/loop/src/all_atom_positions.cc index 38976fed..6ffe6fd8 100644 --- a/loop/src/all_atom_positions.cc +++ b/loop/src/all_atom_positions.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/all_atom_positions.hh b/loop/src/all_atom_positions.hh index 03a2c2c9..ff9b8760 100644 --- a/loop/src/all_atom_positions.hh +++ b/loop/src/all_atom_positions.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/amino_acid_atoms.cc b/loop/src/amino_acid_atoms.cc index 66e5c336..1a6e8dd8 100644 --- a/loop/src/amino_acid_atoms.cc +++ b/loop/src/amino_acid_atoms.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/amino_acid_atoms.hh b/loop/src/amino_acid_atoms.hh index 44b32de1..000ad523 100644 --- a/loop/src/amino_acid_atoms.hh +++ b/loop/src/amino_acid_atoms.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/backbone.cc b/loop/src/backbone.cc index f3167d04..2445c55f 100644 --- a/loop/src/backbone.cc +++ b/loop/src/backbone.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/backbone.hh b/loop/src/backbone.hh index 303fa805..86a2108b 100644 --- a/loop/src/backbone.hh +++ b/loop/src/backbone.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/bb_trace_param.cc b/loop/src/bb_trace_param.cc index 9a3fa35e..ff49fa50 100644 --- a/loop/src/bb_trace_param.cc +++ b/loop/src/bb_trace_param.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/bb_trace_param.hh b/loop/src/bb_trace_param.hh index 821e1ea7..a2ca5b97 100644 --- a/loop/src/bb_trace_param.hh +++ b/loop/src/bb_trace_param.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/data_bag.hh b/loop/src/data_bag.hh index f9926a48..cae271ba 100644 --- a/loop/src/data_bag.hh +++ b/loop/src/data_bag.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/dense_hash_table.hh b/loop/src/dense_hash_table.hh index 1831bd3f..9d612d08 100644 --- a/loop/src/dense_hash_table.hh +++ b/loop/src/dense_hash_table.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/dense_map.hh b/loop/src/dense_map.hh index b0ab0c0f..6ffc9cf6 100644 --- a/loop/src/dense_map.hh +++ b/loop/src/dense_map.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/density_creator.cc b/loop/src/density_creator.cc index 48ba28c5..3630d9f6 100644 --- a/loop/src/density_creator.cc +++ b/loop/src/density_creator.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/density_creator.hh b/loop/src/density_creator.hh index c65a8742..1910b065 100644 --- a/loop/src/density_creator.hh +++ b/loop/src/density_creator.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/forcefield_lookup.cc b/loop/src/forcefield_lookup.cc index 0dbf5a57..f27aee7e 100644 --- a/loop/src/forcefield_lookup.cc +++ b/loop/src/forcefield_lookup.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/forcefield_lookup.hh b/loop/src/forcefield_lookup.hh index cf043ace..1d5290aa 100644 --- a/loop/src/forcefield_lookup.hh +++ b/loop/src/forcefield_lookup.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/frag_db.cc b/loop/src/frag_db.cc index 8bbe4452..4e0bfdd7 100644 --- a/loop/src/frag_db.cc +++ b/loop/src/frag_db.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/frag_db.hh b/loop/src/frag_db.hh index 8df2c8b4..8deb7b19 100644 --- a/loop/src/frag_db.hh +++ b/loop/src/frag_db.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/fragger.cc b/loop/src/fragger.cc index e9db9731..7f5ed5d1 100644 --- a/loop/src/fragger.cc +++ b/loop/src/fragger.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/fragger.hh b/loop/src/fragger.hh index c83d7df9..dfe545f4 100644 --- a/loop/src/fragger.hh +++ b/loop/src/fragger.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/hydrogen_constructor.cc b/loop/src/hydrogen_constructor.cc index 3df6326d..f513ff0e 100644 --- a/loop/src/hydrogen_constructor.cc +++ b/loop/src/hydrogen_constructor.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/hydrogen_constructor.hh b/loop/src/hydrogen_constructor.hh index 3ad2d3a9..30a55189 100644 --- a/loop/src/hydrogen_constructor.hh +++ b/loop/src/hydrogen_constructor.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/hydrogen_rule_lookup.cc b/loop/src/hydrogen_rule_lookup.cc index af209a90..7767999e 100644 --- a/loop/src/hydrogen_rule_lookup.cc +++ b/loop/src/hydrogen_rule_lookup.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/hydrogen_rule_lookup.hh b/loop/src/hydrogen_rule_lookup.hh index 1114e355..33809255 100644 --- a/loop/src/hydrogen_rule_lookup.hh +++ b/loop/src/hydrogen_rule_lookup.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/idx_handler.cc b/loop/src/idx_handler.cc index 688fdbbe..1bd37003 100644 --- a/loop/src/idx_handler.cc +++ b/loop/src/idx_handler.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/idx_handler.hh b/loop/src/idx_handler.hh index 9cecb881..904b1a67 100644 --- a/loop/src/idx_handler.hh +++ b/loop/src/idx_handler.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/loop_object_loader.cc b/loop/src/loop_object_loader.cc index f05bd9db..0a681062 100644 --- a/loop/src/loop_object_loader.cc +++ b/loop/src/loop_object_loader.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/loop_object_loader.hh b/loop/src/loop_object_loader.hh index b42a2ffe..2fb82d0e 100644 --- a/loop/src/loop_object_loader.hh +++ b/loop/src/loop_object_loader.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/mm_system_creator.cc b/loop/src/mm_system_creator.cc index 6bdc36a4..d5ec8d66 100644 --- a/loop/src/mm_system_creator.cc +++ b/loop/src/mm_system_creator.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/mm_system_creator.hh b/loop/src/mm_system_creator.hh index dd4a4171..4792ac94 100644 --- a/loop/src/mm_system_creator.hh +++ b/loop/src/mm_system_creator.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/paged_array.hh b/loop/src/paged_array.hh index 21c2cce8..7a6ea2b6 100644 --- a/loop/src/paged_array.hh +++ b/loop/src/paged_array.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/psipred_prediction.cc b/loop/src/psipred_prediction.cc index 08251013..932efbb8 100644 --- a/loop/src/psipred_prediction.cc +++ b/loop/src/psipred_prediction.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/psipred_prediction.hh b/loop/src/psipred_prediction.hh index 1b32ef59..814ea4ce 100644 --- a/loop/src/psipred_prediction.hh +++ b/loop/src/psipred_prediction.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/sidechain_atom_constructor.cc b/loop/src/sidechain_atom_constructor.cc index e1832ae3..d3637a3d 100644 --- a/loop/src/sidechain_atom_constructor.cc +++ b/loop/src/sidechain_atom_constructor.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/sidechain_atom_constructor.hh b/loop/src/sidechain_atom_constructor.hh index 0c6679e3..6a05c8c4 100644 --- a/loop/src/sidechain_atom_constructor.hh +++ b/loop/src/sidechain_atom_constructor.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/sidechain_atom_rule_lookup.cc b/loop/src/sidechain_atom_rule_lookup.cc index 70afd99a..a099895d 100644 --- a/loop/src/sidechain_atom_rule_lookup.cc +++ b/loop/src/sidechain_atom_rule_lookup.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/sidechain_atom_rule_lookup.hh b/loop/src/sidechain_atom_rule_lookup.hh index 38a35491..24b11a9c 100644 --- a/loop/src/sidechain_atom_rule_lookup.hh +++ b/loop/src/sidechain_atom_rule_lookup.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/stem_geom.hh b/loop/src/stem_geom.hh index b29565da..d808db07 100644 --- a/loop/src/stem_geom.hh +++ b/loop/src/stem_geom.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/structure_db.cc b/loop/src/structure_db.cc index 9f909ab2..cf0cba9e 100644 --- a/loop/src/structure_db.cc +++ b/loop/src/structure_db.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/structure_db.hh b/loop/src/structure_db.hh index c57110f8..89395b36 100644 --- a/loop/src/structure_db.hh +++ b/loop/src/structure_db.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/structure_db_custom_types.hh b/loop/src/structure_db_custom_types.hh index 49ec68b4..17e10662 100644 --- a/loop/src/structure_db_custom_types.hh +++ b/loop/src/structure_db_custom_types.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/torsion_sampler.cc b/loop/src/torsion_sampler.cc index 70d32064..b37aed3f 100644 --- a/loop/src/torsion_sampler.cc +++ b/loop/src/torsion_sampler.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/torsion_sampler.hh b/loop/src/torsion_sampler.hh index 4e5c9fd2..e78cf0c3 100644 --- a/loop/src/torsion_sampler.hh +++ b/loop/src/torsion_sampler.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/src/ushort_vec.hh b/loop/src/ushort_vec.hh index 6339c2ce..b0010d23 100644 --- a/loop/src/ushort_vec.hh +++ b/loop/src/ushort_vec.hh @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_all_atom_env.cc b/loop/tests/test_all_atom_env.cc index 9ef3fe0e..998dd08a 100644 --- a/loop/tests/test_all_atom_env.cc +++ b/loop/tests/test_all_atom_env.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_all_atom_positions.cc b/loop/tests/test_all_atom_positions.cc index 24bdb4c3..e25b4a21 100644 --- a/loop/tests/test_all_atom_positions.cc +++ b/loop/tests/test_all_atom_positions.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_amino_acid_atoms.cc b/loop/tests/test_amino_acid_atoms.cc index 4bad4428..39cf7c32 100644 --- a/loop/tests/test_amino_acid_atoms.cc +++ b/loop/tests/test_amino_acid_atoms.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_backbone.cc b/loop/tests/test_backbone.cc index 6bdd0bdf..e5a8a9cb 100644 --- a/loop/tests/test_backbone.cc +++ b/loop/tests/test_backbone.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_forcefield.cc b/loop/tests/test_forcefield.cc index 7cca86ab..3abc18a7 100644 --- a/loop/tests/test_forcefield.cc +++ b/loop/tests/test_forcefield.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_hydrogens.cc b/loop/tests/test_hydrogens.cc index 78485056..258c5622 100644 --- a/loop/tests/test_hydrogens.cc +++ b/loop/tests/test_hydrogens.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_idx_handler.cc b/loop/tests/test_idx_handler.cc index 4f1fb556..94ceda62 100644 --- a/loop/tests/test_idx_handler.cc +++ b/loop/tests/test_idx_handler.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_mm_system_creator.cc b/loop/tests/test_mm_system_creator.cc index c3b1b42e..6cda3263 100644 --- a/loop/tests/test_mm_system_creator.cc +++ b/loop/tests/test_mm_system_creator.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_psipred_prediction.cc b/loop/tests/test_psipred_prediction.cc index 6bbf8d6d..9c4ecc9a 100644 --- a/loop/tests/test_psipred_prediction.cc +++ b/loop/tests/test_psipred_prediction.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_sidechain_construction.cc b/loop/tests/test_sidechain_construction.cc index df28b8d5..b4d38a70 100644 --- a/loop/tests/test_sidechain_construction.cc +++ b/loop/tests/test_sidechain_construction.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_structuredb.cc b/loop/tests/test_structuredb.cc index c66d38b5..ce6bdf37 100644 --- a/loop/tests/test_structuredb.cc +++ b/loop/tests/test_structuredb.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/test_torsion_sampler.cc b/loop/tests/test_torsion_sampler.cc index 07343771..4e021260 100644 --- a/loop/tests/test_torsion_sampler.cc +++ b/loop/tests/test_torsion_sampler.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/loop/tests/tests.cc b/loop/tests/tests.cc index 9e3aa910..88e3fea4 100644 --- a/loop/tests/tests.cc +++ b/loop/tests/tests.cc @@ -1,4 +1,4 @@ -// Copyright (c) 2013-2018, SIB - Swiss Institute of Bioinformatics and +// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and // Biozentrum - University of Basel // // Licensed under the Apache License, Version 2.0 (the "License"); -- GitLab