diff --git a/docker/qmean_qmeandisco_example/README.md b/docker/qmean_qmeandisco_example/README.md index a2b89f83dd41f3de2892b3ac7d37a5a4a6ff286e..e7fc2f25b9a5940eb8b18a2126592822ba41a3da 100644 --- a/docker/qmean_qmeandisco_example/README.md +++ b/docker/qmean_qmeandisco_example/README.md @@ -16,7 +16,9 @@ sudo docker run --workdir $(pwd) -v $(pwd):$(pwd) -v <PATH_TO_LOCAL_UNICLUST>:/u The directory contains pre-computed profiles that match the sequences in targets.fasta. To speed things up, you can provide them as argument: +```terminal sudo docker run --workdir $(pwd) -v $(pwd):$(pwd) -v <PATH_TO_LOCAL_UNICLUST>:/uniclust30 registry.scicore.unibas.ch/schwede/qmean:4.2.0 run_qmean.py model.pdb --method QMEAN --seqres targets.fasta --profiles query_hhblits_one.a3m query_hhblits_two.a3m +``` Normally, the container creates a temporary directory to store intermediate results. If you want to investigate them, or access the sequence profiles, diff --git a/docker/qmeanbrane_example/README.md b/docker/qmeanbrane_example/README.md index 5a3f4824248e6bbab6d3b8b25cf9a66ce46bf90e..7b263dff7640abda36523eac3404008ae6a13684 100644 --- a/docker/qmeanbrane_example/README.md +++ b/docker/qmeanbrane_example/README.md @@ -20,7 +20,9 @@ sudo docker run --workdir $(pwd) -v $(pwd):$(pwd) -v <PATH_TO_LOCAL_UNICLUST>:/u The directory contains an already pre-computed profile which matches the sequence in targets.fasta. To speed things up, you can provide it as argument: +```terminal sudo docker run --workdir $(pwd) -v $(pwd):$(pwd) -v <PATH_TO_LOCAL_UNICLUST>:/uniclust30 registry.scicore.unibas.ch/schwede/qmean:4.2.0 run_qmean.py original_hhblits_alignment.pdb shift_in_front_helix_four.pdb shift_into_middle.pdb shift_towards_cter.pdb --method QMEANBrane --seqres targets.fasta --profiles query_hhblits.a3m +``` Normally, the container creates a temporary directory to store intermediate results. If you want to investigate them, or access the sequence profiles,