diff --git a/docker/Dockerfile b/docker/Dockerfile
index b0e7b53d48ae01151da461d4525c1984ac17963e..eb66f1288064bb14d6c47caeb4309591a0e39022 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -349,7 +349,7 @@ RUN groupadd --gid $QMEAN_GROUP_ID $QMEAN_GROUP; \
     /usr/bin/chown -R $QMEAN_USER /data
 
 # Copy script to run QMEANDisCo
-COPY run-qmeandisco.py /qmean/
+COPY run_qmean.py /qmean/
 COPY predict_ss_sa.pl /qmean/
 COPY homology_sa.pl /qmean/
 COPY getACCAligns.pl /qmean/
diff --git a/docker/docker-entrypoint.sh b/docker/docker-entrypoint.sh
index 4b8c7e4618668c70537a8ff6ec3d3a3daa9572f4..fc4e103b6537dd32f324c8b308be73d5c2ca0b6f 100755
--- a/docker/docker-entrypoint.sh
+++ b/docker/docker-entrypoint.sh
@@ -11,7 +11,11 @@ if [ $# -eq 0 ]; then
     : #set -- celery -A qm.clryschdlr worker --loglevel=info
 else
     if [ $1 == "qmeandisco" ]; then
-        set -- /qmean/run-qmeandisco.py "${@:2}"
+        set -- /qmean/run_qmean.py --method QMEANDisCo "${@:2}"
+    elif [ $1 == "qmean" ]; then
+        set -- /qmean/run_qmean.py --method QMEAN "${@:2}"
+    elif [ $1 == "qmeanbrane" ]; then
+        set -- /qmean/run_qmean.py --method QMEANBrane "${@:2}"
     fi
 fi
 
diff --git a/docker/run_qmean.py b/docker/run_qmean.py
old mode 100644
new mode 100755