From d6710a9a4e11fa716f633bbf1ea1308fbd9141ee Mon Sep 17 00:00:00 2001
From: B13nch3n <stefan.bienert@me.com>
Date: Tue, 27 Apr 2021 12:34:05 +0200
Subject: [PATCH] Use run_qmean.py in entrypoint
---
docker/Dockerfile | 2 +-
docker/docker-entrypoint.sh | 6 +++++-
docker/run_qmean.py | 0
3 files changed, 6 insertions(+), 2 deletions(-)
mode change 100644 => 100755 docker/run_qmean.py
diff --git a/docker/Dockerfile b/docker/Dockerfile
index b0e7b53..eb66f12 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -349,7 +349,7 @@ RUN groupadd --gid $QMEAN_GROUP_ID $QMEAN_GROUP; \
/usr/bin/chown -R $QMEAN_USER /data
# Copy script to run QMEANDisCo
-COPY run-qmeandisco.py /qmean/
+COPY run_qmean.py /qmean/
COPY predict_ss_sa.pl /qmean/
COPY homology_sa.pl /qmean/
COPY getACCAligns.pl /qmean/
diff --git a/docker/docker-entrypoint.sh b/docker/docker-entrypoint.sh
index 4b8c7e4..fc4e103 100755
--- a/docker/docker-entrypoint.sh
+++ b/docker/docker-entrypoint.sh
@@ -11,7 +11,11 @@ if [ $# -eq 0 ]; then
: #set -- celery -A qm.clryschdlr worker --loglevel=info
else
if [ $1 == "qmeandisco" ]; then
- set -- /qmean/run-qmeandisco.py "${@:2}"
+ set -- /qmean/run_qmean.py --method QMEANDisCo "${@:2}"
+ elif [ $1 == "qmean" ]; then
+ set -- /qmean/run_qmean.py --method QMEAN "${@:2}"
+ elif [ $1 == "qmeanbrane" ]; then
+ set -- /qmean/run_qmean.py --method QMEANBrane "${@:2}"
fi
fi
diff --git a/docker/run_qmean.py b/docker/run_qmean.py
old mode 100644
new mode 100755
--
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