diff --git a/run_af2/src/run_af2/run_singularity.py b/run_af2/src/run_af2/run_singularity.py index 7d1f963241e84c814f4ec7e2619f6b673d996636..1c90ef631171d65b318e1db2d6701b917dcacd79 100644 --- a/run_af2/src/run_af2/run_singularity.py +++ b/run_af2/src/run_af2/run_singularity.py @@ -243,19 +243,6 @@ def run_af2_singularity_image( # pylint: disable=too-many-arguments + "mmcif_files/", obsolete_pdbs_path="/scicore/data/managed/PDB/latest/data/status/" + "obsolete.dat", - # data_dir="/scicore/home/schwede/GROUP/alphafold_data/", - #mgnify_database_path="/scicore/data/managed/MGnify/frozen_210805T103002/" - #+ "mgy_clusters_2018_12.fa", - # uniref30_database_path="/scicore/home/schwede/GROUP/alphafold_data/" - # + "uniref30/UniRef30_2021_03", - # pdb_seqres_database_path="/scicore/home/schwede/GROUP/alphafold_data/" - # + "pdb_seqres/pdb_seqres.txt", - # uniprot_database_path="/scicore/home/schwede/GROUP/alphafold_data/uniprot/" - # + "uniprot.fasta", - # template_mmcif_dir="/scicore/home/schwede/GROUP/alphafold_data/pdb_mmcif/" - # + "mmcif_files/", - # obsolete_pdbs_path="/scicore/home/schwede/GROUP/alphafold_data/pdb_mmcif/" - # + "obsolete.dat", ): """Run the AlphaFold 2 Singularity image on host.