From 061335779864c9d1a6db3bf338ee0a6505454433 Mon Sep 17 00:00:00 2001
From: Joana Pereira <joanapereira@4414.bioz.unibas.ch>
Date: Sat, 6 May 2023 12:29:16 +0200
Subject: [PATCH] implemented the detection of OMBBs that form complexes with
OMBBs
---
barrOs_library.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/barrOs_library.py b/barrOs_library.py
index 75323bd..b593660 100644
--- a/barrOs_library.py
+++ b/barrOs_library.py
@@ -719,6 +719,7 @@ def get_secondary_structure(pdb_file):
run_dssp = sp.Popen(['mkdssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE)
stdout, stderr = run_dssp.communicate()
+ print(stdout)
if len(stderr) > 0:
run_dssp = sp.Popen(['dssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE)
stdout, stderr = run_dssp.communicate()
--
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