diff --git a/barrOs_library.py b/barrOs_library.py
index f666a0ae3eef4a80b4f0303b344363d2eba5fffa..5f92519054d93f88bcf8d74f0321c10927da2ea8 100644
--- a/barrOs_library.py
+++ b/barrOs_library.py
@@ -2304,9 +2304,10 @@ def run_barros(arguments, offset = 1, step = 2, local_angle_threshold = 25, dist
                 for chainID in chains_inpdb:
                     if input_mode == 'pdb_file':
                         chain_pdb, _ = extract_chain(pdb_file, chain, outpdb = 'downloaded_pdbs/{}_{}.pdb'.format(pdbID, chainID))
+                        target_chains.append([pdbID, chainID, chain_pdb, protein_type, membrane_thickness])
                     else:  
                         chain_pdb, protein_type, membrane_thickness = download_pdb('{}_{}'.format(pdbID.split('_')[0], chainID))
-                    target_chains.append([pdbID.split('_')[0], chainID, chain_pdb, protein_type, membrane_thickness])
+                        target_chains.append([pdbID.split('_')[0], chainID, chain_pdb, protein_type, membrane_thickness])
             else:
                 target_chains = None
         else: