diff --git a/barrOs_library.py b/barrOs_library.py index b5936608da0203cb918f689dd4936b9ef70e4c3b..b47c212e7bb96817cb7385ced5c7124d3baeed51 100644 --- a/barrOs_library.py +++ b/barrOs_library.py @@ -719,7 +719,7 @@ def get_secondary_structure(pdb_file): run_dssp = sp.Popen(['mkdssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE) stdout, stderr = run_dssp.communicate() - print(stdout) + print(stderr) if len(stderr) > 0: run_dssp = sp.Popen(['dssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE) stdout, stderr = run_dssp.communicate()