From 2e7af51e7caa1f5747fe456a49c63b7d7d79aa56 Mon Sep 17 00:00:00 2001
From: Joana Pereira <joanapereira@4414.bioz.unibas.ch>
Date: Sat, 6 May 2023 12:30:10 +0200
Subject: [PATCH] implemented the detection of OMBBs that form complexes with
OMBBs
---
barrOs_library.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/barrOs_library.py b/barrOs_library.py
index b593660..b47c212 100644
--- a/barrOs_library.py
+++ b/barrOs_library.py
@@ -719,7 +719,7 @@ def get_secondary_structure(pdb_file):
run_dssp = sp.Popen(['mkdssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE)
stdout, stderr = run_dssp.communicate()
- print(stdout)
+ print(stderr)
if len(stderr) > 0:
run_dssp = sp.Popen(['dssp', '-i', pdb_file, '-o', out_file], stdout=sp.PIPE, stderr=sp.PIPE, stdin=sp.PIPE)
stdout, stderr = run_dssp.communicate()
--
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