From a85f86e8b58c0a7a7755031717e36a8ca36efa8d Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Mon, 3 Oct 2022 14:16:05 +0200
Subject: [PATCH] Cosmetics
---
translate2modelcif.py | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/translate2modelcif.py b/translate2modelcif.py
index aa90588..28642ee 100644
--- a/translate2modelcif.py
+++ b/translate2modelcif.py
@@ -423,7 +423,6 @@ def _get_protocol_steps_and_software(config_data):
"name": "MMseqs2",
"classification": "data collection",
"description": "Many-against-Many sequence searching",
- # ToDo: add citation to ihm.citations
"citation": ihm.citations.mmseqs2,
"location": "https://github.com/soedinglab/mmseqs2",
"type": "package",
@@ -564,8 +563,8 @@ def _check_sequence(up_ac, sequence):
def _fetch_upkb_entry(up_ac):
"""Fetch data for an UniProtKB entry."""
- # This is a simple parser for UniProtKB txt format, instead of breaking it up
- # into multiple functions, we just allow many many branches & statements,
+ # This is a simple parser for UniProtKB txt format, instead of breaking it
+ # up into multiple functions, we just allow many many branches & statements,
# here.
# pylint: disable=too-many-branches,too-many-statements
data = {}
@@ -745,7 +744,8 @@ def _get_sequence_dbs(seq_dbs):
),
"Environmental": modelcif.ReferenceDatabase(
"ColabFold DB",
- "http://wwwuser.gwdg.de/~compbiol/colabfold/colabfold_envdb_202108.tar.gz",
+ "http://wwwuser.gwdg.de/~compbiol/colabfold/"
+ + "colabfold_envdb_202108.tar.gz",
version="2021_08",
),
}
--
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